documentation for test_nobusco

Author: tkchafin

conf/test_nobusco.config

@@ -1,8 +1,9 @@
 /*
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-    Nextflow config file for running minimal tests
+    Nextflow config file for running minimal tests without BUSCO
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-    Defines input files and everything required to run a fast and simple pipeline test.
+    Defines input files and everything required to run a fast and simple pipeline test,
+    using precomputed BUSCO results to skip running BUSCO within the pipeline.
 
     Use as follows:
         nextflow run sanger-tol/blobtoolkit -profile test,<docker/singularity> --outdir <OUTDIR>
@@ -41,9 +42,9 @@ params {
 
     // Precomputed BUSCO outputs
     // busco_output_noArchaea.tar.gz deliberately leaves out archaea_odb10 to test the pipeline's detection and filling of missing lineages
-    // Switch to *_busco_output.tar.gz for fully precomputed BUSCOs
-    precomputed_busco = "https://tolit.cog.sanger.ac.uk/test-data/Meles_meles/resources/GCA_922984935.2_busco_output_noArchaea.tar.gz"
-    //precomputed_busco = "https://tolit.cog.sanger.ac.uk/test-data/Meles_meles/resources/GCA_922984935.2_busco_output.tar.gz"
+    // Use *_busco_output.tar.gz for fully precomputed BUSCOs
+    //precomputed_busco = "https://tolit.cog.sanger.ac.uk/test-data/Meles_meles/resources/GCA_922984935.2_busco_output_noArchaea.tar.gz"
+    precomputed_busco = "https://tolit.cog.sanger.ac.uk/test-data/Meles_meles/resources/GCA_922984935.2_busco_output.tar.gz"
 
     // Need to be set to avoid overfilling /tmp
     use_work_dir_as_temp = true