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tkchafintkchafin
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accepts pre-computed busco as param
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‎busco_output.tar.gz‎

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‎busco_output/run_archaea_odb10/.bbtools_output/.checkpoint‎

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Tool: bbtools
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Version: 39.01
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Run: 1
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Time: 29/01/2025 16:41:17
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Completed 1 jobs
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‎busco_output/run_archaea_odb10/full_table.tsv‎

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# BUSCO version is: 5.7.1
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# The lineage dataset is: archaea_odb10 (Creation date: 2023-08-03, number of genomes: 404, number of BUSCOs: 15)
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# Busco id Status Sequence Gene Start Gene End Strand Score Length
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13565at2157 Missing
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14889at2157 Missing
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22545at2157 Missing
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24288at2157 Missing
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43727at2157 Missing
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55024at2157 Missing
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65833at2157 Missing
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76877at2157 Missing
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87520at2157 Missing
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96138at2157 Missing
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98179at2157 Missing
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98657at2157 Missing
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110798at2157 Missing
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113971at2157 Missing
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115947at2157 Missing

‎busco_output/run_archaea_odb10/hmmer_output/.checkpoint‎

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Tool: hmmsearch
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Version: 3.1
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Run: 1
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Time: 29/01/2025 16:41:41
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Completed 15 jobs
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‎busco_output/run_archaea_odb10/hmmer_output/110798at2157.out‎

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# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord
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# target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target
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#------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- ---------------------
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#
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# Program: hmmsearch
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# Version: 3.1b2 (February 2015)
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# Pipeline mode: SEARCH
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# Query file: /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/blobtoolkit.GCA_922984935.2.2023-08-03/lineages/archaea_odb10/hmms/110798at2157.hmm
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# Target file: /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/GCA_922984935.2-archaea_odb10-busco/GCA_922984935.2.subset.phiXspike.fasta/prodigal_output/predicted_genes/predicted.faa
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# Option settings: hmmsearch --domtblout /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/GCA_922984935.2-archaea_odb10-busco/GCA_922984935.2.subset.phiXspike.fasta/run_archaea_odb10/hmmer_output/110798at2157.out --cpu 1 /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/blobtoolkit.GCA_922984935.2.2023-08-03/lineages/archaea_odb10/hmms/110798at2157.hmm /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/GCA_922984935.2-archaea_odb10-busco/GCA_922984935.2.subset.phiXspike.fasta/prodigal_output/predicted_genes/predicted.faa
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# Current dir: /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS
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# Date: Wed Jan 29 16:41:40 2025
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# [ok]

‎busco_output/run_archaea_odb10/hmmer_output/113971at2157.out‎

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# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord
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# target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target
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#------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- ---------------------
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#
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# Program: hmmsearch
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# Version: 3.1b2 (February 2015)
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# Pipeline mode: SEARCH
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# Query file: /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/blobtoolkit.GCA_922984935.2.2023-08-03/lineages/archaea_odb10/hmms/113971at2157.hmm
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# Target file: /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/GCA_922984935.2-archaea_odb10-busco/GCA_922984935.2.subset.phiXspike.fasta/prodigal_output/predicted_genes/predicted.faa
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# Option settings: hmmsearch --domtblout /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/GCA_922984935.2-archaea_odb10-busco/GCA_922984935.2.subset.phiXspike.fasta/run_archaea_odb10/hmmer_output/113971at2157.out --cpu 1 /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/blobtoolkit.GCA_922984935.2.2023-08-03/lineages/archaea_odb10/hmms/113971at2157.hmm /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/GCA_922984935.2-archaea_odb10-busco/GCA_922984935.2.subset.phiXspike.fasta/prodigal_output/predicted_genes/predicted.faa
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# Current dir: /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS
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# Date: Wed Jan 29 16:41:40 2025
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# [ok]

‎busco_output/run_archaea_odb10/hmmer_output/115947at2157.out‎

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# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord
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# target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target
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#------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- ---------------------
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#
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# Program: hmmsearch
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# Version: 3.1b2 (February 2015)
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# Pipeline mode: SEARCH
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# Query file: /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/blobtoolkit.GCA_922984935.2.2023-08-03/lineages/archaea_odb10/hmms/115947at2157.hmm
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# Target file: /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/GCA_922984935.2-archaea_odb10-busco/GCA_922984935.2.subset.phiXspike.fasta/prodigal_output/predicted_genes/predicted.faa
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# Option settings: hmmsearch --domtblout /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/GCA_922984935.2-archaea_odb10-busco/GCA_922984935.2.subset.phiXspike.fasta/run_archaea_odb10/hmmer_output/115947at2157.out --cpu 1 /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/blobtoolkit.GCA_922984935.2.2023-08-03/lineages/archaea_odb10/hmms/115947at2157.hmm /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/GCA_922984935.2-archaea_odb10-busco/GCA_922984935.2.subset.phiXspike.fasta/prodigal_output/predicted_genes/predicted.faa
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# Current dir: /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS
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# Date: Wed Jan 29 16:41:40 2025
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# [ok]

‎busco_output/run_archaea_odb10/hmmer_output/13565at2157.out‎

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# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord
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# target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target
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#------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- ---------------------
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#
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# Program: hmmsearch
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# Version: 3.1b2 (February 2015)
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# Pipeline mode: SEARCH
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# Query file: /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/blobtoolkit.GCA_922984935.2.2023-08-03/lineages/archaea_odb10/hmms/13565at2157.hmm
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# Target file: /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/GCA_922984935.2-archaea_odb10-busco/GCA_922984935.2.subset.phiXspike.fasta/prodigal_output/predicted_genes/predicted.faa
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# Option settings: hmmsearch --domtblout /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/GCA_922984935.2-archaea_odb10-busco/GCA_922984935.2.subset.phiXspike.fasta/run_archaea_odb10/hmmer_output/13565at2157.out --cpu 1 /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/blobtoolkit.GCA_922984935.2.2023-08-03/lineages/archaea_odb10/hmms/13565at2157.hmm /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/GCA_922984935.2-archaea_odb10-busco/GCA_922984935.2.subset.phiXspike.fasta/prodigal_output/predicted_genes/predicted.faa
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# Current dir: /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS
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# Date: Wed Jan 29 16:41:40 2025
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# [ok]

‎busco_output/run_archaea_odb10/hmmer_output/14889at2157.out‎

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# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord
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# target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target
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# ------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- ---------------------
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OV277441.1:4173305-4174123|- - 273 14889at2157 - 529 0.075 10.5 4.0 1 1 0.00023 0.14 9.6 4.0 64 117 32 84 5 96 0.79 OV277441.1_7092 # 4173305 # 4174123 # -1 # ID=1_7092;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.393
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OV277441.1:5738563-5739393|- - 277 14889at2157 - 529 0.093 10.2 4.0 1 1 0.00023 0.14 9.6 4.0 59 114 31 85 14 97 0.84 OV277441.1_8324 # 5738563 # 5739393 # -1 # ID=1_8324;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.402
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OV277441.1:6753336-6754166|+ - 277 14889at2157 - 529 0.13 9.7 3.4 1 1 0.00032 0.19 9.1 3.4 66 114 38 85 11 109 0.80 OV277441.1_8639 # 6753336 # 6754166 # 1 # ID=1_8639;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.401
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OV277441.1:5635893-5636723|- - 277 14889at2157 - 529 0.16 9.4 3.4 1 1 0.00042 0.25 8.8 3.4 66 114 38 85 13 97 0.79 OV277441.1_8298 # 5635893 # 5636723 # -1 # ID=1_8298;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406
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OV277441.1:6611445-6612284|+ - 280 14889at2157 - 529 0.16 9.4 3.5 1 1 0.00045 0.27 8.7 3.5 66 114 41 88 16 100 0.79 OV277441.1_8567 # 6611445 # 6612284 # 1 # ID=1_8567;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.400
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OV277441.1:6940747-6941586|+ - 280 14889at2157 - 529 0.18 9.3 3.5 1 1 0.00045 0.27 8.7 3.5 66 114 41 88 16 100 0.79 OV277441.1_8780 # 6940747 # 6941586 # 1 # ID=1_8780;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.405
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OV277441.1:4629869-4630699|+ - 277 14889at2157 - 529 0.18 9.2 3.6 1 1 0.00048 0.29 8.6 3.6 65 114 37 85 12 97 0.79 OV277441.1_7667 # 4629869 # 4630699 # 1 # ID=1_7667;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.404
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OV277441.1:5512546-5513385|+ - 280 14889at2157 - 529 0.18 9.2 3.6 1 1 0.00049 0.3 8.5 3.6 65 114 40 88 15 100 0.79 OV277441.1_8251 # 5512546 # 5513385 # 1 # ID=1_8251;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.404
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OV277441.1:5017194-5018033|+ - 280 14889at2157 - 529 0.19 9.2 3.6 1 1 0.00049 0.3 8.5 3.6 65 114 40 88 15 100 0.79 OV277441.1_8033 # 5017194 # 5018033 # 1 # ID=1_8033;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.402
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OV277441.1:4209074-4209913|- - 280 14889at2157 - 529 0.19 9.1 3.6 1 1 0.00049 0.3 8.5 3.6 65 114 40 88 15 100 0.79 OV277441.1_7106 # 4209074 # 4209913 # -1 # ID=1_7106;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.404
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OV277441.1:5921192-5922031|- - 280 14889at2157 - 529 0.19 9.1 3.6 1 1 0.00049 0.3 8.5 3.6 65 114 40 88 15 100 0.79 OV277441.1_8367 # 5921192 # 5922031 # -1 # ID=1_8367;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406
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OV277441.1:5854263-5855102|- - 280 14889at2157 - 529 0.19 9.1 3.6 1 1 0.00049 0.3 8.5 3.6 65 114 40 88 15 100 0.79 OV277441.1_8345 # 5854263 # 5855102 # -1 # ID=1_8345;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406
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OV277441.1:5236950-5237789|- - 280 14889at2157 - 529 0.19 9.1 3.6 1 1 0.00049 0.3 8.5 3.6 65 114 40 88 15 100 0.79 OV277441.1_8140 # 5236950 # 5237789 # -1 # ID=1_8140;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.405
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OV277441.1:6301304-6302191|- - 296 14889at2157 - 529 0.23 8.9 3.7 1 1 0.00058 0.35 8.3 3.7 66 113 38 84 13 95 0.79 OV277441.1_8465 # 6301304 # 6302191 # -1 # ID=1_8465;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.403
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OV277441.1:5996341-5997171|- - 277 14889at2157 - 529 0.29 8.6 3.4 1 1 0.00075 0.45 7.9 3.4 66 114 38 85 12 99 0.79 OV277441.1_8386 # 5996341 # 5997171 # -1 # ID=1_8386;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406
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OV277441.1:4288533-4289480|- - 316 14889at2157 - 529 0.3 8.5 2.7 1 1 0.00081 0.49 7.8 2.7 68 114 79 124 50 137 0.81 OV277441.1_7164 # 4288533 # 4289480 # -1 # ID=1_7164;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.403
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#
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# Program: hmmsearch
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# Version: 3.1b2 (February 2015)
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# Pipeline mode: SEARCH
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# Query file: /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/blobtoolkit.GCA_922984935.2.2023-08-03/lineages/archaea_odb10/hmms/14889at2157.hmm
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# Target file: /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/GCA_922984935.2-archaea_odb10-busco/GCA_922984935.2.subset.phiXspike.fasta/prodigal_output/predicted_genes/predicted.faa
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# Option settings: hmmsearch --domtblout /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/GCA_922984935.2-archaea_odb10-busco/GCA_922984935.2.subset.phiXspike.fasta/run_archaea_odb10/hmmer_output/14889at2157.out --cpu 1 /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/blobtoolkit.GCA_922984935.2.2023-08-03/lineages/archaea_odb10/hmms/14889at2157.hmm /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/GCA_922984935.2-archaea_odb10-busco/GCA_922984935.2.subset.phiXspike.fasta/prodigal_output/predicted_genes/predicted.faa
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# Current dir: /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS
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# Date: Wed Jan 29 16:41:40 2025
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# [ok]

‎busco_output/run_archaea_odb10/hmmer_output/22545at2157.out‎

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# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord
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# target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target
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#------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- ---------------------
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#
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# Program: hmmsearch
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# Version: 3.1b2 (February 2015)
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# Pipeline mode: SEARCH
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# Query file: /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/blobtoolkit.GCA_922984935.2.2023-08-03/lineages/archaea_odb10/hmms/22545at2157.hmm
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# Target file: /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/GCA_922984935.2-archaea_odb10-busco/GCA_922984935.2.subset.phiXspike.fasta/prodigal_output/predicted_genes/predicted.faa
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# Option settings: hmmsearch --domtblout /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/GCA_922984935.2-archaea_odb10-busco/GCA_922984935.2.subset.phiXspike.fasta/run_archaea_odb10/hmmer_output/22545at2157.out --cpu 1 /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/blobtoolkit.GCA_922984935.2.2023-08-03/lineages/archaea_odb10/hmms/22545at2157.hmm /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS/GCA_922984935.2-archaea_odb10-busco/GCA_922984935.2.subset.phiXspike.fasta/prodigal_output/predicted_genes/predicted.faa
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# Current dir: /var/folders/8l/k3tystcs0wq_kgx6py_rcv640000gq/T/nxf.fxbrRBgyyS
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# Date: Wed Jan 29 16:41:40 2025
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# [ok]

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