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python-black linting
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bin/generate_config.py

Lines changed: 6 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -122,7 +122,12 @@ def get_classification(taxon_info: TaxonInfo) -> typing.Dict[str, str]:
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return {r: ancestors[r] for r in RANKS if r in ancestors}
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def get_odb(taxon_info: TaxonInfo, lineage_tax_ids: str, requested_buscos: typing.Optional[str], pre_computed_buscos: typing.List[str]) -> typing.List[str]:
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def get_odb(
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taxon_info: TaxonInfo,
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lineage_tax_ids: str,
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requested_buscos: typing.Optional[str],
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pre_computed_buscos: typing.List[str],
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) -> typing.List[str]:
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# Read the mapping between the BUSCO lineages and their taxon_id
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with open(lineage_tax_ids) as file_in:
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lineage_tax_ids_dict: typing.Dict[int, str] = {}

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