I think the downloading of the package relys on a dependency (SDMTools) that is no longer available

[beatriceallamand]

Hi! I fail on installing the rblm package, and the console tells me the problem is packages ‘graph’, ‘SDMTools’ are not available.

This was my code:

Activate RTools

writeLines('PATH="${RTOOLS40_HOME}\usr\bin;${PATH}"', con = "~/.Renviron")
Sys.which("make")

Download BLM

require(devtools)
install_github("tlamadon/rblm")

And this is the message I get:
Installing package into ‘C:/Users/Bea/Dropbox/Mi PC (DESKTOP-9IIBU1N)/Documents/R/win-library/4.0’
(as ‘lib’ is unspecified)
ERROR: dependency 'SDMTools' is not available for package 'rblm'

• removing 'C:/Users/Bea/Dropbox/Mi PC (DESKTOP-9IIBU1N)/Documents/R/win-library/4.0/rblm'
  Warning messages:
  1: packages ‘graph’, ‘SDMTools’ are not available for this version of R

Thank you :)

[tlamadon]

Hi there! Sorry to see this! I will try to find some time to take a look. These moving dependencies are really a headache!

[tlamadon]

did you try to install the graph library as explained here:
https://bioconductor.org/packages/release/bioc/html/graph.html

I took a drastic approach... I removed ggm and SDMTools from the dependencies... Can you give it a try?
Also, depending on what you are trying to do, we are putting together a python version that you can find here:
https://tlamadon.github.io/pytwoway/notebooks/blm_example.html

Let me know!

[beatriceallamand]

Thank you very much! I will try that now. Beatrice Allamand. El jue, 29 abr 2021 a las 14:12, Thibaut Lamadon ***@***.***>) escribió:

…

did you try to install the graph library as explained here: https://bioconductor.org/packages/release/bioc/html/graph.html I took a drastic approach... I removed ggm and SDMTools from the dependencies... Can you give it a try? Also, depending on what you are trying to do, we putting together a python version that you can find here: https://tlamadon.github.io/pytwoway/notebooks/blm_example.html Let me know! — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#5 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AT4NEQ3OSIUTWSLQWVM6RHTTLGORZANCNFSM432IF7CQ> .

[beatriceallamand]

Hi! The installation process is now successfully completed, but when I call the packages, R tells me they are not there-

require(rblm)

Loading required package: rblm Warning message: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘rblm’ Same happens with knitr and kableExtra. Maybe there is something else I'm missing. Thank you so much! Beatrice Allamand. El jue, 29 abr 2021 a las 14:59, Beatrice Allamand (< ***@***.***>) escribió:

…

Thank you very much! I will try that now. Beatrice Allamand. El jue, 29 abr 2021 a las 14:12, Thibaut Lamadon (< ***@***.***>) escribió: > did you try to install the graph library as explained here: > https://bioconductor.org/packages/release/bioc/html/graph.html > > I took a drastic approach... I removed ggm and SDMTools from the > dependencies... Can you give it a try? > Also, depending on what you are trying to do, we putting together a > python version that you can find here: > https://tlamadon.github.io/pytwoway/notebooks/blm_example.html > > Let me know! > > — > You are receiving this because you authored the thread. > Reply to this email directly, view it on GitHub > <#5 (comment)>, > or unsubscribe > <https://github.com/notifications/unsubscribe-auth/AT4NEQ3OSIUTWSLQWVM6RHTTLGORZANCNFSM432IF7CQ> > . >