appendices.tex

%this file handles all the appendices to be built into the thesis
%to get the ordering and numbering right, follow the format below:

%\appendixtitle %once
%\appendix %once
%\chapter{first appendix title}
%\input{first appendix file}  %don't use \include!!
%\newpage
%\chapter{sedond appendix title...}

%--------- these occur once --------
\appendixtitle
\appendix
%-----------------------------------
\lstset{
  frame=bt,
  breakatwhitespace=false,
  captionpos=b
}

\chapter{APPENDIX I CODE}

In this appendix, the source code for the data pipeline written in Perl is shown. These scripts establish the standard data format expected by the R libraries.

\input{appendix_1}

\newpage
\chapter{APPENDIX II CODE}

In this appendix, the source code for the R language libraries is shown. These libraries make up the framework used by the case studies for data analysis and visualization.

\input{appendix_2}

\newpage
\chapter{APPENDIX III CODE}

In this appendix, the source code for each of the case study analysis is shown. These scripts show thorough examples of the framework's usage.

\input{appendix_3}