Hello there,
I just wanted to report what I think is a small error:
/home/sivico/mambaforge/envs/Phasing/bin/methphasing:4: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
from pkg_resources import require
Traceback (most recent call last):
File "/home/sivico/mambaforge/envs/Phasing/bin/methphasing", line 1470, in <module>
main(sys.argv[1:])
File "/home/sivico/mambaforge/envs/Phasing/bin/methphasing", line 1395, in main
max_expension_list_larger += [(phased_region_list[0][0], phased_region_list[1][0])]
IndexError: list index out of range
When I looked at the code, and considering my input, I think that this IndexError comes from the fact that the code is expecting at least 2 blocks to merge in any given sequence. If there is a sequence with a single block, instead of skipping the sequence (because there is nothing to do), it tries to index the second block that does not exist, and then the error emerges.
I hope this is helpful to you.
Sivico
Hello there,
I just wanted to report what I think is a small error:
When I looked at the code, and considering my input, I think that this
IndexErrorcomes from the fact that the code is expecting at least 2 blocks to merge in any given sequence. If there is a sequence with a single block, instead of skipping the sequence (because there is nothing to do), it tries to index the second block that does not exist, and then the error emerges.I hope this is helpful to you.
Sivico