GIFT 4.0.6.0 (May 15, 2025)

GIFT 4.0.6.0 (May 15, 2025):

• Added missing modalityType option
• Added Domains to Neuromark_sMRI_3.0_modelorder-100_3x3x3.txt (v4.0.5.32)
• First version of State Guided ICA of dFNC, including calibration
• For dFNC, the option to remove the mean over time is included
• Showing proper GIFT version in about box
• Showing proper GIFT version for command groupica --ver
• Added tsv table with estimate cluster statistics and script to display the explained variance per cluster configuration
• Added white matter NeuroMark (NeuroMark_fMRI_WM_2.2_modelorder-multi.*)
• Modified GIFT so it consistently performes time series operations in the following order: 1) detrend 2) regress out motion (or other variables) 3) despike 4)filter
  • Same adjustment but for MANCOVAN
  • Added logs so that dFNC processing to see the order of time series operations
• Fixed bug with two regressing out of motion with a detrend in between
• Added FNC ICA Toolbox
  • Rekha Saha's FNC read of text files
  • Publication: LONGITUDINAL WHOLE-BRAIN FUNCTIONAL NETWORK CHANGE PATTERNS OVER TWO-YEAR PERIOD IN THE ABCD DATA (2022) https://doi.org/10.1109/ISBI52829.2022.9761647
• Autolabeller implemented
  • Prerequisites (BCT) not needed any more
  • Small changes to noisecloud
• Added support for SBM preprocessing option: preproc=none
• NeuroMark fMRI 2.2 released
• Updated Input_sbm.m with new parameters
• Implemented Ashkan's new dFNC GUI to GIFT
  • Fix so DFNC shared trajectory has a default win size of 0
  • Options window is updated to turn off and on selected UI controls
  • Modified options in temporal dfnc gui
• Added mexmaca64 for Apple silicon (Mac M1) support
• Implemented adaptive reverse constrained ICA EBM (arcEBM) with sign flipping depending on reference component correlation
• Place holder for GIFT-BIDS (gica_bids_app.m)
• Sbm update, added feature to keep subjects means when processing SBM
• Fixed gift-bids-app bug that results are not saved as proper sessions
• Disable num comp in gui for spatially constrained ica
• NeuroMark version 3 models added
• Noisecloud info added that max TR is 2 seconds
• Fixed additional bugs related with:
  • Sessions and character array values
  • Changed INTERP_VAL=0 for MANCOVAN output
• Updated icatb_defaults.m for ssb-swpc
• Updated icatb_groupNetworks.m