Merge branch 'main' into interpolation-gpu

Author: svchb

.buildkite/pipeline.yml

@@ -2,7 +2,7 @@ steps:
   - label: "CUDA"
     plugins:
       - JuliaCI/julia#v1:
-          version: "1.11"
+          version: "1.12"
     agents:
       queue: "juliagpu"
       cuda: "*"
@@ -16,7 +16,7 @@ steps:
   - label: "AMDGPU"
     plugins:
       - JuliaCI/julia#v1:
-          version: "1.11"
+          version: "1.12"
     agents:
       queue: "juliagpu"
       rocm: "*"
@@ -30,7 +30,7 @@ steps:
   - label: "Metal"
     plugins:
       - JuliaCI/julia#v1:
-          version: "1.11"
+          version: "1.12"
     agents:
       queue: "juliaecosystem"
       os: "macos"

.github/dependabot.yml

@@ -5,3 +5,11 @@ updates:
     directory: "/" # Location of package manifests
     schedule:
       interval: "monthly"
+    groups:
+      # Group all GitHub Actions PRs into a single PR:
+      all-github-actions:
+        patterns:
+          - "*"
+    ignore:
+      - dependency-name: "julia-actions/julia-downgrade-compat"
+        versions: [ ">=2.0.0" ]

.github/workflows/Documenter.yml

@@ -31,13 +31,13 @@ jobs:
                 os: [ubuntu-latest, windows-latest]
     steps:
       - name: Check out project
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Set up Julia
         uses: julia-actions/setup-julia@v2
         with:
           version: '1'
           show-versioninfo: true
-      - uses: julia-actions/cache@v2
+      - uses: julia-actions/cache@v3
       - name: Build package
         uses: julia-actions/julia-buildpkg@v1
       - name: Install dependencies

.github/workflows/FormatCheck.yml

@@ -13,13 +13,13 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Check out project
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Set up Julia
         uses: julia-actions/setup-julia@v2
         with:
           version: '1'
       - run: julia -e 'using InteractiveUtils; versioninfo(verbose=true)'
-      - uses: julia-actions/cache@v2
+      - uses: julia-actions/cache@v3
       - name: Install JuliaFormatter and format
         # This will use the latest version by default but you can set the version like so:
         #

.github/workflows/Invalidations.yml

@@ -20,12 +20,12 @@ jobs:
       with:
         # TODO: Is broken in 1.11 revert to 1 after fix
         version: '1.10'
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
     - uses: julia-actions/julia-buildpkg@v1
     - uses: julia-actions/julia-invalidations@v1
       id: invs_pr
 
-    - uses: actions/checkout@v5
+    - uses: actions/checkout@v6
       with:
         ref: ${{ github.event.repository.default_branch }}
     - uses: julia-actions/julia-buildpkg@v1

.github/workflows/SpellCheck.yml

@@ -8,6 +8,6 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout Actions Repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Check spelling
-        uses: crate-ci/typos@v1.39.0
+        uses: crate-ci/typos@v1.44.0

.github/workflows/TriggerGPUTests.yml

@@ -11,7 +11,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Trigger Buildkite Pipeline
-        uses: "buildkite/trigger-pipeline-action@v2.4.0"
+        uses: "buildkite/trigger-pipeline-action@v2.4.1"
         with:
           buildkite_api_access_token: ${{ secrets.TRIGGER_BK_BUILD_TOKEN }}
           pipeline: "julialang/trixiparticles"

.github/workflows/ci.yml

@@ -44,6 +44,7 @@ jobs:
         version:
           - '1.10'
           - '1.11'
+          - '1.12'
         os:
           - ubuntu-latest
         include:
@@ -53,14 +54,14 @@ jobs:
             os: windows-latest
           - version: '1.10'
             os: macos-14
-          - version: '1.11'
+          - version: '1.12'
             os: windows-latest
-          - version: '1.11'
+          - version: '1.12'
             os: macos-14
 
     steps:
       - name: Check out project
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
 
       - name: Set up Julia
         uses: julia-actions/setup-julia@v2
@@ -70,7 +71,7 @@ jobs:
       - name: Display Julia version
         run: julia -e 'using InteractiveUtils; versioninfo(verbose=true)'
 
-      - uses: julia-actions/cache@v2
+      - uses: julia-actions/cache@v3
 
       - name: Build package
         uses: julia-actions/julia-buildpkg@v1
@@ -94,7 +95,7 @@ jobs:
       - name: Upload unit coverage report to Codecov
         # Only run coverage in one Job (Ubuntu and latest Julia version)
         if: matrix.os == 'ubuntu-latest' && matrix.version == '1.11'
-        uses: codecov/codecov-action@v5
+        uses: codecov/codecov-action@v6
         with:
           files: lcov.info
           fail_ci_if_error: true
@@ -121,7 +122,7 @@ jobs:
       - name: Upload total coverage report to Codecov
         # Only run coverage in one Job (Ubuntu and latest Julia version)
         if: matrix.os == 'ubuntu-latest' && matrix.version == '1.11'
-        uses: codecov/codecov-action@v5
+        uses: codecov/codecov-action@v6
         with:
           files: lcov.info
           fail_ci_if_error: true

NEWS.md

@@ -4,6 +4,62 @@ TrixiParticles.jl follows the interpretation of
 [semantic versioning (semver)](https://julialang.github.io/Pkg.jl/dev/compatibility/#Version-specifier-format-1)
 used in the Julia ecosystem. Notable changes will be documented in this file for human readability.
 
+## Version 0.4.4
+
+### API Changes
+
+- Custom quantities called in the `PostprocessCallback` are now passed CPU arrays when
+  the simulation is run on a GPU (#1065).
+
+### Features
+
+- Added `StateEquationAdaptiveCole` an adaptive sound speed version of the Cole state equation (#875).
+- Added `RigidBodySystem` that supports rigid body dynamics for FSI (#1076).
+- Added `RigidContactModel` that supports rigid-wall and rigid-rigid collisions (#1090, #1091).
+- Added a specialized neighborhood search for TLSPH self-interaction (#1016).
+- Added CFL condition for TLSPH and split integration (#1030).
+- Added new validation case hydrostatic water column (#724).
+- Added Carreau–Yasuda non-Newtonian viscosity model (#1010).
+
+### Important Bugfixes
+
+- Fixed the periodic array of cylinders example file (#975).
+- A `StepsizeCallback` can now be used with open boundaries (#1074).
+
+### Documentation
+
+- Added a new tutorial for rigid body dynamics (#1095).
+- Better overview page for tutorials (#1093).
+
+## Version 0.4.3
+
+### API Changes
+
+- Added the keyword `coordinates_eltype` to `RectangularTank`,
+  `RectangularShape` and `SphereShape`, which defaults to `Float64` (#956).
+
+- Added keywords `element_type` and `coordinates_eltype` to `vtk2trixi` (#991)
+
+### Features
+- Added support for ASCII STL files with multiple patches as separate geometries,
+  plus a function `extrude_geometry` and a union operation for `TrixiParticles.TriangleMesh` (#962).
+
+- Added an `RCRWindkesselModel` open-boundary pressure model as a lumped-parameter
+  description of vascular systems (#935, #1019, #992).
+
+- Added support for FP64 coordinates when using FP32 GPU computations, fixing
+  stability issues at high resolutions (#956).
+
+- Added a new `LaguerreGaussKernel` smoothing kernel (#893).
+
+- Added GPU and FP32 support for DEM (#979).
+
+
+### Performance
+- Improved GPU performance with shifting up to a factor of 10x (#974, #993).
+
+- Significantly improved GPU performance of TLSPH (#1014).
+
 ## Version 0.4.2
 
 ### API Changes

Project.toml

@@ -1,9 +1,10 @@
 name = "TrixiParticles"
 uuid = "66699cd8-9c01-4e9d-a059-b96c86d16b3a"
 authors = ["erik.faulhaber <44124897+efaulhaber@users.noreply.github.com>"]
-version = "0.4.2"
+version = "0.4.5-dev"
 
 [deps]
+Accessors = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697"
 Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
 CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
 DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
@@ -34,14 +35,14 @@ TrixiBase = "9a0f1c46-06d5-4909-a5a3-ce25d3fa3284"
 WriteVTK = "64499a7a-5c06-52f2-abe2-ccb03c286192"
 
 [weakdeps]
-IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953"
 OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
 OrdinaryDiffEqCore = "bbf590c4-e513-4bbe-9b18-05decba2e5d8"
 
 [extensions]
 TrixiParticlesOrdinaryDiffEqExt = ["OrdinaryDiffEq", "OrdinaryDiffEqCore"]
 
 [compat]
+Accessors = "0.1.43"
 Adapt = "4"
 CSV = "0.10"
 DataFrames = "1.6"
@@ -51,13 +52,12 @@ FastPow = "0.1"
 FileIO = "1"
 ForwardDiff = "1"
 GPUArraysCore = "0.2"
-IntervalSets = "0.7 - 0.7.11"
 JSON = "1"
 KernelAbstractions = "0.9"
 MuladdMacro = "0.2"
 OrdinaryDiffEq = "6.91"
-OrdinaryDiffEqCore = "1"
-PointNeighbors = "0.6.3"
+OrdinaryDiffEqCore = "2, 3"
+PointNeighbors = "0.6.5"
 Polyester = "0.7.10"
 ReadVTK = "0.2"
 RecipesBase = "1"