Remove include repos (#4469)

* Removed redundant IncludeRepos mentions.

* removed proto for IncludeRepos and remade protos

* removed another instance of includeRepos

* reverted proto removal and

* actually deprecated the field

* ran make protos

Author: jordanTunstill

pkg/engine/github.go

@@ -20,7 +20,6 @@ func (e *Engine) ScanGitHub(ctx context.Context, c sources.GithubConfig) (source
 		Repositories:               c.Repos,
 		ScanUsers:                  c.IncludeMembers,
 		IgnoreRepos:                c.ExcludeRepos,
-		IncludeRepos:               c.IncludeRepos,
 		IncludeForks:               c.IncludeForks,
 		IncludeIssueComments:       c.IncludeIssueComments,
 		IncludePullRequestComments: c.IncludePullRequestComments,