Merge pull request #13 from tuneinsight/release-v1.1.0

v1.1.0 release

Author: fhoussiau

PKG-INFO

@@ -1,21 +1,23 @@
 Metadata-Version: 2.1
 Name: tuneinsight
-Version: 1.0.1
+Version: 1.1.0
 Summary: Official Python SDK for the Tune Insight API. The current version is compatible with the same version of the API.
 License: Apache-2.0
 Author: Tune Insight SA
-Requires-Python: >=3.9,<4.0
+Requires-Python: >=3.9, !=2.7.*, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, !=3.6.*, !=3.7.*, !=3.8.*
 Classifier: License :: OSI Approved :: Apache Software License
 Classifier: Programming Language :: Python :: 3
-Classifier: Programming Language :: Python :: 3.9
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
 Requires-Dist: PyYAML (>=6.0,<7.0)
 Requires-Dist: attrs (>=21.3.0)
 Requires-Dist: black (==24.2.0)
 Requires-Dist: certifi (>=2024.07.04,<2025.0.0)
+Requires-Dist: cryptography (>=44.0.1,<45.0.0)
+Requires-Dist: h11 (>=0.16.0,<0.17.0)
 Requires-Dist: httpx (>=0.15.4,<0.28.0)
+Requires-Dist: jinja2 (>=3.1.6,<4.0.0)
 Requires-Dist: jupyter (>=1.1.1,<2.0.0)
 Requires-Dist: jupyterlab (==4.2.5)
 Requires-Dist: matplotlib (>=3.5.0,<4.0.0)

README.md

@@ -74,7 +74,7 @@ pip freeze | grep tuneinsight
 The result should look like this:
 
 ```
-tuneinsight==1.0.1
+tuneinsight==1.1.0
 ```
 
 If you see a line that looks like this,
@@ -85,7 +85,7 @@ tuneinsight @ file:///path/to/file/tuneinsight-0.13.1-py3-none-any.whl#sha256=..
 
 the SDK was installed directly from a `.whl` file, suggesting you are using an older version. You might need to install a more recent version, using `pip`:
 
-`pip install tuneinsight==1.0.1`
+`pip install tuneinsight==1.1.0`
 
 #### Error: Could not load the cryptolib: contact your administrator.
 

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "tuneinsight"
-version = "1.0.1"
+version = "1.1.0"
 description = "Official Python SDK for the Tune Insight API. The current version is compatible with the same version of the API."
 authors = ["Tune Insight SA"]
 license = "Apache-2.0"
@@ -20,14 +20,17 @@ pattern = "^v(?P<base>\\d+\\.\\d+\\.\\d+)"
 format = "{base}"
 
 [tool.poetry.dependencies]
-python = ">= 3.9,<4.0"
+python = ">3.9.0,<3.9.1 || >3.9.1,<4.0"
 python-keycloak = "^3.9.0"
 PyYAML = "^6.0"
 notebook = "^6.4.11"
 python-dotenv = "^0.21.0"
 python-dateutil = "^2.8.0"
 matplotlib = "^3.5.0"
 typing-extensions = "^4.6.3"
+h11 = "^0.16.0"
+jinja2 = "^3.1.6"
+cryptography = "^44.0.1"
 
 # Required by ge_co_rest_api
 httpx = ">=0.15.4,<0.28.0"

src/tuneinsight/api/api-checksum

@@ -1 +1 @@
-0d5fa5e5c06de59a4c29dc6aa5cf12011640e12055eafcc55c58ac91f5428782
+b023866fb4734796dcf385bd51e14abd8711a989ad73876a1fee8b49e2f3c775

src/tuneinsight/api/sdk/api/api_ontology/build_global_catalog.py

@@ -0,0 +1,160 @@
+from http import HTTPStatus
+from typing import Any, Dict, Optional, Union, cast
+
+import httpx
+
+from ... import errors
+from ...client import Client
+from ...models.error import Error
+from ...types import Response
+
+
+def _get_kwargs(
+    *,
+    client: Client,
+) -> Dict[str, Any]:
+    url = "{}/build-global-catalog".format(client.base_url)
+
+    headers: Dict[str, str] = client.get_headers()
+    cookies: Dict[str, Any] = client.get_cookies()
+
+    # Set the proxies if the client has proxies set.
+    proxies = None
+    if hasattr(client, "proxies") and client.proxies is not None:
+        https_proxy = client.proxies.get("https")
+        if https_proxy:
+            proxies = https_proxy
+        else:
+            http_proxy = client.proxies.get("http")
+            if http_proxy:
+                proxies = http_proxy
+
+    return {
+        "method": "post",
+        "url": url,
+        "headers": headers,
+        "cookies": cookies,
+        "timeout": client.get_timeout(),
+        "proxies": proxies,
+    }
+
+
+def _parse_response(*, client: Client, response: httpx.Response) -> Optional[Union[Any, Error]]:
+    if response.status_code == HTTPStatus.OK:
+        response_200 = cast(Any, None)
+        return response_200
+    if response.status_code == HTTPStatus.FORBIDDEN:
+        response_403 = Error.from_dict(response.json())
+
+        return response_403
+    if response.status_code == HTTPStatus.NOT_FOUND:
+        response_404 = Error.from_dict(response.json())
+
+        return response_404
+    if response.status_code == HTTPStatus.INTERNAL_SERVER_ERROR:
+        response_500 = Error.from_dict(response.json())
+
+        return response_500
+    if client.raise_on_unexpected_status:
+        raise errors.UnexpectedStatus(f"Unexpected status code: {response.status_code} ({response})")
+    else:
+        return None
+
+
+def _build_response(*, client: Client, response: httpx.Response) -> Response[Union[Any, Error]]:
+    return Response(
+        status_code=HTTPStatus(response.status_code),
+        content=response.content,
+        headers=response.headers,
+        parsed=_parse_response(client=client, response=response),
+    )
+
+
+def sync_detailed(
+    *,
+    client: Client,
+) -> Response[Union[Any, Error]]:
+    """Build the global catalog on the root instance
+
+    Raises:
+        errors.UnexpectedStatus: If the server returns an undocumented status code and Client.raise_on_unexpected_status is True.
+        httpx.TimeoutException: If the request takes longer than Client.timeout.
+
+    Returns:
+        Response[Union[Any, Error]]
+    """
+
+    kwargs = _get_kwargs(
+        client=client,
+    )
+
+    response = httpx.request(
+        verify=client.verify_ssl,
+        **kwargs,
+    )
+
+    return _build_response(client=client, response=response)
+
+
+def sync(
+    *,
+    client: Client,
+) -> Optional[Union[Any, Error]]:
+    """Build the global catalog on the root instance
+
+    Raises:
+        errors.UnexpectedStatus: If the server returns an undocumented status code and Client.raise_on_unexpected_status is True.
+        httpx.TimeoutException: If the request takes longer than Client.timeout.
+
+    Returns:
+        Response[Union[Any, Error]]
+    """
+
+    return sync_detailed(
+        client=client,
+    ).parsed
+
+
+async def asyncio_detailed(
+    *,
+    client: Client,
+) -> Response[Union[Any, Error]]:
+    """Build the global catalog on the root instance
+
+    Raises:
+        errors.UnexpectedStatus: If the server returns an undocumented status code and Client.raise_on_unexpected_status is True.
+        httpx.TimeoutException: If the request takes longer than Client.timeout.
+
+    Returns:
+        Response[Union[Any, Error]]
+    """
+
+    kwargs = _get_kwargs(
+        client=client,
+    )
+
+    async with httpx.AsyncClient(verify=client.verify_ssl) as _client:
+        response = await _client.request(**kwargs)
+
+    return _build_response(client=client, response=response)
+
+
+async def asyncio(
+    *,
+    client: Client,
+) -> Optional[Union[Any, Error]]:
+    """Build the global catalog on the root instance
+
+    Raises:
+        errors.UnexpectedStatus: If the server returns an undocumented status code and Client.raise_on_unexpected_status is True.
+        httpx.TimeoutException: If the request takes longer than Client.timeout.
+
+    Returns:
+        Response[Union[Any, Error]]
+    """
+
+    return (
+        await asyncio_detailed(
+            client=client,
+        )
+    ).parsed

src/tuneinsight/api/sdk/api/api_ontology/get_ontology_search.py

@@ -17,6 +17,8 @@ def _get_kwargs(
     per_page: Union[Unset, None, int] = 30,
     page: Union[Unset, None, int] = 1,
     query: str,
+    with_occurrence: Union[Unset, None, bool] = UNSET,
+    with_network_occurrence: Union[Unset, None, bool] = UNSET,
     ontologies: List[GetOntologySearchOntologiesItem],
 ) -> Dict[str, Any]:
     url = "{}/ontology-search".format(client.base_url)
@@ -31,6 +33,10 @@ def _get_kwargs(
 
     params["query"] = query
 
+    params["withOccurrence"] = with_occurrence
+
+    params["withNetworkOccurrence"] = with_network_occurrence
+
     json_ontologies = []
     for ontologies_item_data in ontologies:
         ontologies_item = ontologies_item_data.value
@@ -110,6 +116,8 @@ def sync_detailed(
     per_page: Union[Unset, None, int] = 30,
     page: Union[Unset, None, int] = 1,
     query: str,
+    with_occurrence: Union[Unset, None, bool] = UNSET,
+    with_network_occurrence: Union[Unset, None, bool] = UNSET,
     ontologies: List[GetOntologySearchOntologiesItem],
 ) -> Response[Union[Error, List["GetOntologySearchResponse200Item"]]]:
     """Search ontologies with a search term
@@ -118,6 +126,8 @@ def sync_detailed(
         per_page (Union[Unset, None, int]):  Default: 30.
         page (Union[Unset, None, int]):  Default: 1.
         query (str):
+        with_occurrence (Union[Unset, None, bool]):
+        with_network_occurrence (Union[Unset, None, bool]):
         ontologies (List[GetOntologySearchOntologiesItem]):
 
     Raises:
@@ -133,6 +143,8 @@ def sync_detailed(
         per_page=per_page,
         page=page,
         query=query,
+        with_occurrence=with_occurrence,
+        with_network_occurrence=with_network_occurrence,
         ontologies=ontologies,
     )
 
@@ -150,6 +162,8 @@ def sync(
     per_page: Union[Unset, None, int] = 30,
     page: Union[Unset, None, int] = 1,
     query: str,
+    with_occurrence: Union[Unset, None, bool] = UNSET,
+    with_network_occurrence: Union[Unset, None, bool] = UNSET,
     ontologies: List[GetOntologySearchOntologiesItem],
 ) -> Optional[Union[Error, List["GetOntologySearchResponse200Item"]]]:
     """Search ontologies with a search term
@@ -158,6 +172,8 @@ def sync(
         per_page (Union[Unset, None, int]):  Default: 30.
         page (Union[Unset, None, int]):  Default: 1.
         query (str):
+        with_occurrence (Union[Unset, None, bool]):
+        with_network_occurrence (Union[Unset, None, bool]):
         ontologies (List[GetOntologySearchOntologiesItem]):
 
     Raises:
@@ -173,6 +189,8 @@ def sync(
         per_page=per_page,
         page=page,
         query=query,
+        with_occurrence=with_occurrence,
+        with_network_occurrence=with_network_occurrence,
         ontologies=ontologies,
     ).parsed
 
@@ -183,6 +201,8 @@ async def asyncio_detailed(
     per_page: Union[Unset, None, int] = 30,
     page: Union[Unset, None, int] = 1,
     query: str,
+    with_occurrence: Union[Unset, None, bool] = UNSET,
+    with_network_occurrence: Union[Unset, None, bool] = UNSET,
     ontologies: List[GetOntologySearchOntologiesItem],
 ) -> Response[Union[Error, List["GetOntologySearchResponse200Item"]]]:
     """Search ontologies with a search term
@@ -191,6 +211,8 @@ async def asyncio_detailed(
         per_page (Union[Unset, None, int]):  Default: 30.
         page (Union[Unset, None, int]):  Default: 1.
         query (str):
+        with_occurrence (Union[Unset, None, bool]):
+        with_network_occurrence (Union[Unset, None, bool]):
         ontologies (List[GetOntologySearchOntologiesItem]):
 
     Raises:
@@ -206,6 +228,8 @@ async def asyncio_detailed(
         per_page=per_page,
         page=page,
         query=query,
+        with_occurrence=with_occurrence,
+        with_network_occurrence=with_network_occurrence,
         ontologies=ontologies,
     )
 
@@ -221,6 +245,8 @@ async def asyncio(
     per_page: Union[Unset, None, int] = 30,
     page: Union[Unset, None, int] = 1,
     query: str,
+    with_occurrence: Union[Unset, None, bool] = UNSET,
+    with_network_occurrence: Union[Unset, None, bool] = UNSET,
     ontologies: List[GetOntologySearchOntologiesItem],
 ) -> Optional[Union[Error, List["GetOntologySearchResponse200Item"]]]:
     """Search ontologies with a search term
@@ -229,6 +255,8 @@ async def asyncio(
         per_page (Union[Unset, None, int]):  Default: 30.
         page (Union[Unset, None, int]):  Default: 1.
         query (str):
+        with_occurrence (Union[Unset, None, bool]):
+        with_network_occurrence (Union[Unset, None, bool]):
         ontologies (List[GetOntologySearchOntologiesItem]):
 
     Raises:
@@ -245,6 +273,8 @@ async def asyncio(
             per_page=per_page,
             page=page,
             query=query,
+            with_occurrence=with_occurrence,
+            with_network_occurrence=with_network_occurrence,
             ontologies=ontologies,
         )
     ).parsed

src/tuneinsight/api/sdk/api/api_project/post_project.py

@@ -62,6 +62,10 @@ def _parse_response(*, client: Client, response: httpx.Response) -> Optional[Uni
         response_403 = Error.from_dict(response.json())
 
         return response_403
+    if response.status_code == HTTPStatus.CONFLICT:
+        response_409 = Error.from_dict(response.json())
+
+        return response_409
     if response.status_code == HTTPStatus.UNPROCESSABLE_ENTITY:
         response_422 = Error.from_dict(response.json())