Merge pull request #7 from tylergross97/update-samplesheet-urls #38
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| name: nf-test | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| NXF_VER: | |
| - "25.04.6" | |
| TEST_FILE: | |
| - tests/modules/fastp.nf.test | |
| - tests/modules/xengsort_classify.nf.test | |
| - tests/modules/xengsort_index.nf.test | |
| - tests/modules/xengsort_summary.nf.test | |
| steps: | |
| - name: Check out pipeline code | |
| uses: actions/checkout@v4 | |
| - name: Install Nextflow | |
| env: | |
| NXF_VER: ${{ matrix.NXF_VER }} | |
| run: | | |
| wget -qO- get.nextflow.io | bash | |
| sudo mv nextflow /usr/local/bin/ | |
| nextflow -version | |
| - name: Install nf-test | |
| uses: nf-core/setup-nf-test@v1 | |
| - name: Run nf-test | |
| run: | | |
| mkdir -p reports | |
| nf-test test ${{ matrix.TEST_FILE }} --profile test,docker --verbose --tap reports/test-results-${{ strategy.job-index }}.tap |