nextflow_xengsort/.github/workflows/nf-test.yml at 0a2277b93d3d8a45c3ff8a20eb2367d525327145 · tylergross97/nextflow_xengsort · GitHub

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name: nf-test

on:
  push:
    branches:
      - main
  pull_request:
    branches:
      - main

jobs:
  test:
    runs-on: ubuntu-latest
    strategy:
      matrix:
        NXF_VER:
          - "25.04.6"
        TEST_FILE:
          - tests/modules/fastp.nf.test
          - tests/modules/xengsort_classify.nf.test
          - tests/modules/xengsort_index.nf.test
          - tests/modules/xengsort_summary.nf.test

    steps:
      - name: Check out pipeline code
        uses: actions/checkout@v4

      - name: Install Nextflow
        env:
          NXF_VER: ${{ matrix.NXF_VER }}
        run: |
          wget -qO- get.nextflow.io | bash
          sudo mv nextflow /usr/local/bin/
          nextflow -version

      - name: Install nf-test
        uses: nf-core/setup-nf-test@v1

      - name: Run nf-test
        run: |
          mkdir -p reports
          nf-test test ${{ matrix.TEST_FILE }} --profile test,docker --verbose --tap reports/test-results-${{ strategy.job-index }}.tap