Fix S3 samplesheet path to root location

Seqera AI · Seqera AI · commit 25ad76ff2767 · 2026-02-20T20:01:36.000Z
diff --git a/nextflow.config b/nextflow.config
@@ -82,7 +82,7 @@ profiles {
         }
         params {
             // Direct S3 paths from nf-core test data (no staging required)
-            input = "s3://seqera-showcase/xengsort-test/samplesheet_s3.csv"
+            input = "s3://seqera-showcase/samplesheet_s3.csv"
             hg38_fasta = "s3://ngi-igenomes/igenomes/Homo_sapiens/NCBI/GRCh38/Sequence/WholeGenomeFasta/genome.fa"
             nsg_fasta = "s3://ngi-igenomes/igenomes/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa"
             outdir_base = 'results_test_s3'

Original file line number	Diff line number	Diff line change
`@@ -82,7 +82,7 @@ profiles {`
`82`	`82`	`}`
`83`	`83`	`params {`
`84`	`84`	`// Direct S3 paths from nf-core test data (no staging required)`
`85`		`- input = "s3://seqera-showcase/xengsort-test/samplesheet_s3.csv"`
	`85`	`+ input = "s3://seqera-showcase/samplesheet_s3.csv"`
`86`	`86`	`hg38_fasta = "s3://ngi-igenomes/igenomes/Homo_sapiens/NCBI/GRCh38/Sequence/WholeGenomeFasta/genome.fa"`
`87`	`87`	`nsg_fasta = "s3://ngi-igenomes/igenomes/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa"`
`88`	`88`	`outdir_base = 'results_test_s3'`