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nf-metro update
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‎README.md‎

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- **NSG-optimized**: Compatible with NSG-adapted mouse reference genome
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## Workflow
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![Pipeline Workflow](pipeline.svg)
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```mermaid
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flowchart TB
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subgraph " "

‎pipeline.mmd‎

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%%metro title: Xenograft Sorting Pipeline
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%%metro style: dark
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%%metro line: main | Main Processing | #4CAF50
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%%metro line: index | Genome Indexing | #FF9800
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%%metro line: qc | Quality Control | #2196F3
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graph LR
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input[Samplesheet]
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hg38[hg38 FASTA]
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nsg[NSG FASTA]
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fastp[FASTP]
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xengsort_index[XENGSORT_INDEX]
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xengsort_classify[XENGSORT_CLASSIFY]
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xengsort_summary[XENGSORT_SUMMARY]
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multiqc[MULTIQC]
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input -->|main| fastp
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hg38 -->|index| xengsort_index
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nsg -->|index| xengsort_index
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fastp -->|main| xengsort_classify
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xengsort_index -->|index| xengsort_classify
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xengsort_classify -->|main| xengsort_summary
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fastp -->|qc| multiqc

‎pipeline.svg‎

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