Merge pull request #4 from tylergross97/seqera-ai/20260220-181546-fix-test-memory-config

Fix test profile memory configuration for xengsort

Author: tylergross97

modules/xengsort_index.nf

@@ -10,13 +10,13 @@ process XENGSORT_INDEX {
     path "xengsort_index.*", emit: index_files
 
     script:
+    def args = task.ext.args ?: '-n 4500000000 -k 25'
     """
     xengsort index \\
         --index xengsort_index \\
         --host ${mouse_fasta} \\
         --graft ${human_fasta} \\
-        -n 4500000000 \\
-        -k 25
+        ${args}
      """
 
     // Add a stub block for minimal test

nextflow.config

@@ -39,13 +39,15 @@ profiles {
 
             // Specific configuration for memory-intensive processes
             withName: 'XENGSORT_CLASSIFY' {
-                memory = '4.GB'
+                memory = '8.GB'
                 cpus = 2
             }
 
             withName: 'XENGSORT_INDEX' {
                 memory = '2.GB'
                 cpus = 2
+                // Use much smaller index for test data to reduce memory requirements
+                ext.args = '-n 100000000 -k 25'
             }
         }
         params {