Fix XENGSORT_SUMMARY: add missing container directive

Seqera AI · Seqera AI · commit f1ecf680a20a · 2026-02-20T18:25:23.000Z
Added ubuntu:22.04 container to fix AWS Batch execution error.
Process only uses bash and awk, so standard ubuntu image is sufficient.

Fixes workflow run 45Cf6sKCIIpuuO
diff --git a/modules/xengsort_summary.nf b/modules/xengsort_summary.nf
@@ -1,4 +1,5 @@
 process XENGSORT_SUMMARY {
+    container "ubuntu:22.04"
     publishDir "${params.outdir_base}/xengsort", mode: 'copy'
     
     input:

Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,5 @@`
`1`	`1`	`process XENGSORT_SUMMARY {`
	`2`	`+ container "ubuntu:22.04"`
`2`	`3`	`publishDir "${params.outdir_base}/xengsort", mode: 'copy'`
`3`	`4`
`4`	`5`	`input:`