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property_value: dc-title "Uber-anatomy ontology" xsd:string
property_value: dc-description "Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data." xsd:string
property_value: foaf-homepage "http://uberon.org" xsd:anyURI
property_value: dc-publisher "http://uberon.org" xsd:anyURI
property_value: dcterms-isReferencedBy "http://genomebiology.com/2012/13/1/R5" xsd:anyURI
property_value: dcterms-isReferencedBy "http://www.ncbi.nlm.nih.gov/pubmed/22293552" xsd:anyURI
property_value: dc-rights http://creativecommons.org/licenses/by/3.0/
property_value: dc-creator "Chris Mungall - http://orcid.org/0000-0002-6601-2165 " xsd:string
property_value: dc-creator "Melissa Haendel" xsd:string
property_value: dc-creator "Alex Dececchi" xsd:string
property_value: dc-creator "Nizar Ibrahim" xsd:string
property_value: dc-creator "Aurelie Comte" xsd:string
property_value: dc-creator "Anne Niknejad" xsd:string
property_value: dc-creator "Wasila Dahdul" xsd:string
property_value: dc-creator "Erik Segerdell" xsd:string
property_value: dc-creator "David Blackburn" xsd:string
property_value: dc-contributor "Suzanna Lewis" xsd:string
property_value: dc-contributor "Paula Mabee" xsd:string
property_value: dc-contributor "George Gkoutos" xsd:string
property_value: dc-contributor "Carlo Torniai" xsd:string
property_value: dc-contributor "Maryann Martone" xsd:string
property_value: dc-contributor "Bill Bug" xsd:string
property_value: dc-contributor "Terry Hayamizu" xsd:string
property_value: dc-contributor "Alexander Diehl" xsd:string
property_value: dc-contributor "Ann Maglia" xsd:string
property_value: dc-contributor "Terry Meehan" xsd:string
property_value: dc-contributor "Yvonne Bradford" xsd:string
property_value: dc-contributor "James Balhoff" xsd:string
property_value: dc-contributor "Hilmar Lapp" xsd:string
property_value: dc-contributor "David Osumi-Sutherland" xsd:string
property_value: dc-contributor "Jonathan Bard" xsd:string
property_value: dc-contributor "Duncan Davidson" xsd:string
property_value: dc-contributor "David Hill" xsd:string
property_value: dc-contributor "Rebecca Foulger" xsd:string
property_value: dc-contributor "Shahim Essaid" xsd:string
property_value: dc-contributor "Ceri Van Slyke" xsd:string
property_value: dc-contributor "Paul Schofield" xsd:string
property_value: dc-contributor "Robert Druzinsky" xsd:string
property_value: dc-contributor "Paul Sereno" xsd:string
property_value: dc-contributor "Brian K Hall" xsd:string
property_value: dc-contributor "Frederic Bastian" xsd:string
property_value: dc-contributor "Marc Robinson-Rechavi" xsd:string
property_value: dc-contributor "Onard Mejino" xsd:string
property_value: dc-contributor "Alan Ruttenberg" xsd:string
property_value: dc-contributor "Cynthia Smith" xsd:string
property_value: dc-contributor "Anna Anagnostopoulos" xsd:string
property_value: dc-contributor "James Malone" xsd:string
property_value: dc-contributor "Catherine Leroy" xsd:string
property_value: dc-contributor "Sarah Whitcher Kansa - https://orcid.org/0000-0001-7920-5321" xsd:string
property_value: dc-contributor "Lydie Lane" xsd:string
property_value: dc-contributor "Paula Duek Roggli" xsd:string
property_value: dc-contributor "Trish Whetzel" xsd:string
property_value: dc-contributor "Mark Engelstad - https://orcid.org/0000-0001-5889-4463" xsd:string
property_value: dc-contributor "Phenoscape Project" xsd:string
property_value: dc-contributor "Bgee Project - http://bgee.unil.ch" xsd:string
property_value: dc-contributor "PATO Project" xsd:string
property_value: dc-contributor "Gene Ontology Consortium" xsd:string
property_value: dc-contributor "NIF Project - http://neuinfo.org/" xsd:string
property_value: dc-contributor "neXtProt project" xsd:string
property_value: dc-source http://purl.obolibrary.org/obo/ma.owl
property_value: dc-source http://purl.obolibrary.org/obo/fma.owl
property_value: dc-source http://purl.obolibrary.org/obo/ehdaa2.owl
property_value: dc-source http://purl.obolibrary.org/obo/emapa.owl
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property_value: dc-source http://purl.obolibrary.org/obo/vhog.owl
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property_value: dc-source http://purl.obolibrary.org/obo/aeo.owl
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property_value: dc-source http://en.wikipedia.org/wiki/
property_value: dc-source http://dbpedia.org
property_value: dc-source http://palaeos.com
property_value: dc-source http://uri.neuinfo.org/nif/nifstd
property_value: dc-source http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl
property_value: dc-source http://purl.obolibrary.org/obo/go.owl
property_value: dc-source http://purl.obolibrary.org/obo/hp.owl
property_value: dc-source http://purl.obolibrary.org/obo/mp.owl
property_value: dc-source http://purl.obolibrary.org/obo/cl.owl
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property_value: dc-source http://www.brain-map.org
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property_value: dc-source http://pons.incf.org/wiki/Common_Upper_Mammalian_Brain_Ontology_%28Cumbo%29
property_value: dc-source "MESH" xsd:string
property_value: dc-source "ISBN10:0073040584 Vertebrates, Kardong" xsd:string
property_value: dc-source "ISBN:9780878932504 Developmental Biology" xsd:string
property_value: dc-source "ISBN10:0471888893 Comparative Vertebrate Neuroanatomy: Evolution and Adaptation by Butler and Hodos" xsd:string
property_value: dc-source "ISBN:0030229073 Invertebrate Zoology, Barnes" xsd:string
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property_value: dc-source "ISBN:9780120749034 The laboratory rat" xsd:string
property_value: dc-source "PMID:16417468 Forgotten and novel aspects in pancreas development, Pieler and Chen" xsd:string
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property_value: dc-source "ISBN:0683400088 Stedman's Medical Dictionary" xsd:string
property_value: dc-source "ISBN10:1588900649 Color Atlas and Textbook of Human Anatomy: Nervous system and sensory organs By Werner Kahle, Michael Frotscher" xsd:string
property_value: dc-source "ISBN:9780397517251 Surgical anatomy of the hand and upper extremity. By James R. Doyle and Michael J. Botte" xsd:string
property_value: dc-source "ISBN:9780674021839 The Tree of Life - Guillaume Lecointre, Herve Le Guyader" xsd:string
property_value: dc-source "PMID:11433360 Placental development: lessons from mouse mutants" xsd:string
property_value: dc-source "ISBN10:1607950324 Craniofacial Embryogenetics & Development, 2nd edition, Sperber" xsd:string
property_value: dc-source "ISBN:978-0-12-369548-2 Principles of Developmental Genetics, Sally A Moody" xsd:string
property_value: dc-source "ISBN10:0123813611 Comparative Anatomy and Histology: A Mouse and Human Atlas, Treuting and Dintzis" xsd:string
property_value: dc-source "https://docs.google.com/document/d/1MnUgispgGfNQoezYzWzzGTnkAnI0gzRnJIwdip6MMtw/edit" xsd:anyURI
property_value: dc-source "http://wiki.phenotypercn.org/wg/phenotypercn/index.php?title=Neural_Crest_Workshop" xsd:anyURI
property_value: dc-source "https://docs.google.com/document/d/16JZOuH9sh_a8uIXA4cqg0Q1H6MV5yCj3-rhuKsZoV_U/edit" xsd:anyURI
property_value: dc-source "https://docs.google.com/document/d/1cPWBqrl_Qy7XHEWFqtR_PgQX61yRkgGuLaiDpnEXxkE/edit" xsd:anyURI
property_value: dc-source "https://docs.google.com/document/d/1r9kNPpFYGdu0SpJDLyFAVQczBlG0wAZCBMd18gG3Ot8/edit#" xsd:anyURI
property_value: dc-source "https://docs.google.com/spreadsheet/ccc?key=0Aj8NJdyb-leqdDM0R3hTVTRHRExDVjRCSkZEbDc5N1E#gid=0" xsd:anyURI
property_value: dc-source "http://wiki.phenotypercn.org/wiki/August_2012_Notes" xsd:anyURI
property_value: doap-GitRepository "https://github.com/cmungall/uberon/" xsd:anyURI
property_value: doap-SVNRepository "https://obo.svn.sourceforge.net/svnroot/obo/uberon/" xsd:anyURI
property_value: doap-bug-database "https://github.com/obophenotype/uberon/issues/" xsd:anyURI
property_value: doap-mailing-list "https://lists.sourceforge.net/lists/listinfo/obo-anatomy" xsd:anyURI
subsetdef: feed_aligned "subset of classes that have logical defs text defs and synonyms aligned with FEED"
subsetdef: defined_by_cytoarchitecture "brain region defined by cyto-architecture"
subsetdef: cumbo "CUMBO"
subsetdef: efo_slim "EFO slim"
subsetdef: pheno_slim "Phenotype slim"
subsetdef: uberon_slim "Uberon slim - subset that excludes obscure terms and deep compositional terms"
subsetdef: grouping_class "Subset consisting of classes creating for grouping purposes"
subsetdef: homology_grouping "A grouping class that depends on an assumption of homology between subclasses"
subsetdef: developmental_classification "developmental_classification"
subsetdef: functional_classification "functional_classification"
subsetdef: emapa_ehdaa2 "derived from the union of EHDAA2 and EMAPA - still to be checked"
subsetdef: inconsistent_with_fma "classes that have some inconsistency with FMA"
subsetdef: dubious_grouping "Indicates that subclasses in AOs may be inappropriately linked"
subsetdef: unverified_taxonomic_grouping "Indicates that the class encompasses classes from other AOs that have not been verified"
subsetdef: upper_level "abstract upper-level terms not directly useful for analysis"
subsetdef: non_informative "abstract class brought in to group ontology classes but not informative"
subsetdef: defined_by_ordinal_series "classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology"
subsetdef: vertebrate_core "core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO"
subsetdef: metazoa_core "core classes typically found across metazoa. one purpose is to create a rough set of terms that could be used to start a new metazoan AO. Note this subset is not yet fully fleshed out"
subsetdef: major_organ "somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads"
subsetdef: organ_slim "organs, excluding individual muscles and skeletal elements"
subsetdef: early_development "A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes."
subsetdef: phenotype_rcn "A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA"
subsetdef: cyclostome_subset "cyclostome structures"
synonymtypedef: NON_AMNIOTE "synonym that is inappropriate for amniotes"
synonymtypedef: NON_MAMMAL "synonym that is inappropriate for mammals"
synonymtypedef: COMPARATIVE_PREFERRED "preferred term in the context of comparative anatomy"
synonymtypedef: HUMAN_PREFERRED "preferred term when talking about an instance of this class in Homo sapiens"
synonymtypedef: ABBREVIATION "abbreviation"
synonymtypedef: LATIN "latin term"
synonymtypedef: PLURAL "plural term"
synonymtypedef: DEVELOPMENTAL "developmental term"
synonymtypedef: DUBIOUS "dubious or contested synonym"
synonymtypedef: SENSU "taxonomic disambiguation"
synonymtypedef: PENDING_REVIEW "expert consultation and attribution required"
synonymtypedef: INCONSISTENT "indicates that a synonym is used in an inconsistent or confusing way, typically between species"
synonymtypedef: DEPRECATED "A historic synonym, no longer encouraged"
synonymtypedef: HOMOLOGY "a synonym made on the basis of a possibly homologous structure in another species"
synonymtypedef: SYSTEMATIC "a systematic synonym used as the base name for design patterns"
synonymtypedef: MISSPELLING "a mis-spelling that is in common use and thus recorded"
default-namespace: uberon
treat-xrefs-as-equivalent: EFO
treat-xrefs-as-equivalent: CARO
treat-xrefs-as-equivalent: AEO
treat-xrefs-as-equivalent: GO
treat-xrefs-as-equivalent: BSPO
treat-xrefs-as-equivalent: BILA
treat-xrefs-as-equivalent: OG
treat-xrefs-as-equivalent: VSAO
treat-xrefs-as-has-subclass: EHDAA
treat-xrefs-as-has-subclass: OGES
treat-xrefs-as-has-subclass: EV
treat-xrefs-as-has-subclass: SCTID
treat-xrefs-as-is_a: VHOG
treat-xrefs-as-has-subclass: NCIT
treat-xrefs-as-reverse-genus-differentia: AAO part_of NCBITaxon:8292
treat-xrefs-as-reverse-genus-differentia: FBbt part_of NCBITaxon:7227
treat-xrefs-as-reverse-genus-differentia: FBdv part_of NCBITaxon:7227
treat-xrefs-as-reverse-genus-differentia: FMA part_of NCBITaxon:9606
treat-xrefs-as-reverse-genus-differentia: EHDAA2 part_of NCBITaxon:9606
treat-xrefs-as-reverse-genus-differentia: HsapDv part_of NCBITaxon:9606
treat-xrefs-as-reverse-genus-differentia: HAO part_of NCBITaxon:7399
treat-xrefs-as-reverse-genus-differentia: MA part_of NCBITaxon:10090
treat-xrefs-as-reverse-genus-differentia: MBA part_of NCBITaxon:10090
treat-xrefs-as-reverse-genus-differentia: DMBA part_of NCBITaxon:10090
treat-xrefs-as-reverse-genus-differentia: DHBA part_of NCBITaxon:9606
treat-xrefs-as-reverse-genus-differentia: HBA part_of NCBITaxon:9606
treat-xrefs-as-reverse-genus-differentia: PBA part_of NCBITaxon:9443
treat-xrefs-as-reverse-genus-differentia: EMAPA part_of NCBITaxon:10090
treat-xrefs-as-reverse-genus-differentia: MmusDv part_of NCBITaxon:10090
treat-xrefs-as-reverse-genus-differentia: MFO part_of NCBITaxon:8089
treat-xrefs-as-reverse-genus-differentia: OlatDv part_of NCBITaxon:8089
treat-xrefs-as-reverse-genus-differentia: SPD part_of NCBITaxon:6893
treat-xrefs-as-reverse-genus-differentia: TGMA part_of NCBITaxon:44484
treat-xrefs-as-reverse-genus-differentia: TADS part_of NCBITaxon:6939
treat-xrefs-as-reverse-genus-differentia: TAO part_of NCBITaxon:32443
treat-xrefs-as-reverse-genus-differentia: WBbt part_of NCBITaxon:6237
treat-xrefs-as-reverse-genus-differentia: WBls part_of NCBITaxon:6237
treat-xrefs-as-reverse-genus-differentia: XAO part_of NCBITaxon:8353
treat-xrefs-as-reverse-genus-differentia: ZFA part_of NCBITaxon:7954
treat-xrefs-as-reverse-genus-differentia: ZFS part_of NCBITaxon:7954
!treat-xrefs-as-reverse-genus-differentia: BSA part_of NCBITaxon:7712 - need to resolve pericardium
!treat-xrefs-as-reverse-genus-differentia: BSD part_of NCBITaxon:7712
ontology: uberon/core
import: http://purl.obolibrary.org/obo/uberon/pato_import.owl
import: http://purl.obolibrary.org/obo/uberon/go_import.owl
import: http://purl.obolibrary.org/obo/uberon/pr_import.owl
import: http://purl.obolibrary.org/obo/uberon/chebi_import.owl
import: http://purl.obolibrary.org/obo/uberon/ncbitaxon_import.owl
import: http://purl.obolibrary.org/obo/uberon/cl_import.owl
import: http://purl.obolibrary.org/obo/uberon/envo_import.owl
import: http://purl.obolibrary.org/obo/uberon/nbo_import.owl
import: http://purl.obolibrary.org/obo/uberon/ro_import.owl
!!!import: http://purl.obolibrary.org/obo/uberon/homology.owl
idspace: Wikipedia http://en.wikipedia.org/wiki/
idspace: NCBIBook http://www.ncbi.nlm.nih.gov/books/
idspace: dbpowl http://dbpedia.org/ontology/
idspace: foaf http://xmlns.com/foaf/0.1
idspace: NIFSTD http://uri.neuinfo.org/nif/nifstd/
idspace: SIO http://semanticscience.org/resource/SIO_
idspace: NeuroNames http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=
idspace: doi https://doi.org/
idspace: PMID http://www.ncbi.nlm.nih.gov/pubmed/
idspace: ORC http://orcid.org/
[Term]
id: UBERON:0004088 ! orbital region
name: orbital region
disjoint_union_over: part_of UBERON:0035639 ! ocular adnexa
disjoint_union_over: part_of UBERON:0010230 ! eyeball of camera-type eye
[Term]
id: UBERON:0011784 ! feather shaft
name: feather shaft
disjoint_union_over: part_of UBERON:0008288 ! feather rachis
disjoint_union_over: part_of UBERON:0008287 ! feather vane
[Term]
id: UBERON:0000104 ! life cycle
name: life cycle
disjoint_union_over: part_of UBERON:0000068 ! embryo stage
disjoint_union_over: part_of UBERON:0000092 ! post-embryonic stage
[Term]
id: UBERON:0000170 ! pair of lungs ! pair of lungs
name: pair of lungs
disjoint_union_over: part_of UBERON:0002168 ! left lung
disjoint_union_over: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0000178 ! blood
name: blood
!disjoint_union_over: part_of CL:0000232 ! erythrocyte
!disjoint_union_over: part_of UBERON:0001969 ! blood plasma
[Term]
id: UBERON:0004716 ! conceptus
name: conceptus
!disjoint_union_over: part_of UBERON:0016887 ! entire extraembryonic component *PENDING*
!disjoint_union_over: part_of UBERON:0002050 ! embryonic structure *PENDING*
[Term]
id: UBERON:0010190 ! pair of dorsal aortae
name: pair of dorsal aortae
disjoint_union_over: part_of UBERON:0005613 ! left dorsal aorta
disjoint_union_over: part_of UBERON:0005622 ! right dorsal aorta
[Term]
id: UBERON:0001016 ! nervous system
name: nervous system
disjoint_union_over: part_of UBERON:0001017 ! central nervous system
disjoint_union_over: part_of UBERON:0000010 ! peripheral nervous system
[Term]
id: UBERON:0011932 ! pilosebaceous unit
name: pilosebaceous unit
disjoint_union_over: part_of UBERON:0002073 ! hair follicle
disjoint_union_over: part_of UBERON:0001821 ! sebaceous gland
disjoint_union_over: part_of UBERON:0002033 ! arrector muscle of hair
[Term]
id: UBERON:0034942 ! vibrissal follicle-sinus complex
name: vibrissal follicle-sinus complex
disjoint_union_over: part_of UBERON:0034941 ! blood sinus of vibrissa
disjoint_union_over: part_of UBERON:0010419 ! vibrissa follicle
[Term]
id: UBERON:0002074 ! hair shaft
name: hair shaft
disjoint_union_over: part_of UBERON:0002077 ! cortex of hair
disjoint_union_over: part_of UBERON:0005184 ! hair medulla
[Term]
id: UBERON:0001103 ! diaphragm
name: diaphragm
disjoint_union_over: part_of UBERON:0035831 ! costal diaphragm
disjoint_union_over: part_of UBERON:0014765 ! crus of diaphragm
disjoint_union_over: part_of UBERON:0006670 ! central tendon of diaphragm
[Term]
id: UBERON:0002421 ! hippocampal formation
name: hippocampal formation
disjoint_union_over: part_of UBERON:0001954 ! Ammon's horn
disjoint_union_over: part_of UBERON:0001885 ! dentate gyrus of hippocampal formation
disjoint_union_over: part_of UBERON:0002191 ! subiculum
[Term]
id: UBERON:0001969 ! blood plasma
name: blood plasma
!disjoint_union_over: part_of GO:0005577 ! fibrinogen complex
!disjoint_union_over: part_of UBERON:0001977 ! serum
[Term]
id: UBERON:0011137 ! axial skeletal system ! axial skeletal system
name: axial skeletal system
!disjoint_union_over: part_of UBERON:0003129 ! skull
!disjoint_union_over: part_of UBERON:0001130 ! vertebral column
!disjoint_union_over: part_of UBERON:0014478 ! rib skeletal system
[Term]
id: UBERON:0005944 ! axial skeleton plus cranial skeleton
name: axial skeleton plus cranial skeleton
!disjoint_union_over: part_of UBERON:0003129 ! skull
!disjoint_union_over: part_of UBERON:0001130 ! vertebral column
!disjoint_union_over: part_of UBERON:0002228 ! rib
!disjoint_union_over: part_of UBERON:0000975 ! sternum
[Term]
id: UBERON:0012125 ! dermatological-muscosal system
name: dermatological-muscosal system
disjoint_union_over: part_of UBERON:0002097 ! skin of body
disjoint_union_over: part_of UBERON:0002072 ! hypodermis
disjoint_union_over: part_of UBERON:0000009 ! submucosa
disjoint_union_over: part_of UBERON:0000344 ! mucosa
[Term]
id: UBERON:0002199 ! integument
name: integument
disjoint_union_over: part_of UBERON:0002072 ! hypodermis
disjoint_union_over: part_of UBERON:0002097 ! skin of body
[Term]
id: UBERON:0035819 ! abdominopelvic cavity
name: abdominopelvic cavity
disjoint_union_over: part_of UBERON:0008203 ! pelvic cavity
disjoint_union_over: part_of UBERON:0003684 ! abdominal cavity
[Term]
id: UBERON:0035820 ! peritoneal sac ! peritoneal sac
name: peritoneal sac
disjoint_union_over: part_of UBERON:0002358 ! peritoneum
disjoint_union_over: part_of UBERON:0001179 ! peritoneal cavity
[Term]
id: UBERON:0000977 ! pleura
name: pleura
disjoint_union_over: part_of UBERON:0002401 ! visceral pleura
disjoint_union_over: part_of UBERON:0002400 ! parietal pleura
[Term]
id: UBERON:0009778 ! pleural sac
name: pleural sac
disjoint_union_over: part_of UBERON:0000977 ! pleura
disjoint_union_over: part_of UBERON:0002402 ! pleural cavity
[Term]
id: UBERON:0015410 ! heart plus pericardium
name: heart plus pericardium
!Exception: epicardium
!disjoint_union_over: part_of UBERON:0000948 ! heart
!disjoint_union_over: part_of UBERON:0002407 ! pericardium
[Term]
id: UBERON:0002407 ! pericardium
name: pericardium
!disjoint_union_over: part_of UBERON:0002359 ! fibrous pericardium
!disjoint_union_over: part_of UBERON:0002406 ! pericardial sac
[Term]
id: UBERON:0002357 ! serous pericardium
name: serous pericardium
!relationship: has_part UBERON:0002348 ! epicardium
disjoint_union_over: part_of UBERON:0002408 ! parietal serous pericardium
disjoint_union_over: part_of UBERON:0002425 ! visceral serous pericardium
[Term]
id: UBERON:0008947 ! respiratory primordium ! respiratory primordium
name: respiratory primordium
disjoint_union_over: part_of UBERON:0036073 ! respiratory primordium associated mesenchyme
disjoint_union_over: part_of UBERON:0036072 ! respiratory primordium epithelium