-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathsearch.py
More file actions
239 lines (200 loc) · 7.75 KB
/
search.py
File metadata and controls
239 lines (200 loc) · 7.75 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
import base64
import numpy as np
from fastapi import APIRouter, File, HTTPException, UploadFile
from fundus_murag.data.dto import (
EmbeddingQuery,
FundusCollection,
FundusCollectionSemanticSearchResult,
FundusRecord,
FundusRecordSemanticSearchResult,
LexicalSearchQuery,
RecordLexicalSearchQuery,
)
from fundus_murag.data.vector_db import VectorDB
from fundus_murag.ml.client import FundusMLClient
router = APIRouter(prefix="/search", tags=["search"])
vdb = VectorDB()
ml_client = FundusMLClient()
@router.post(
"/records/image_similarity_search",
# "/records/image_similarity_search",
response_model=list[FundusRecordSemanticSearchResult],
summary="Perform a similarity search of records based on an image embedding.",
tags=["search"],
)
def fundus_record_image_similarity_search(query: EmbeddingQuery):
"""
Perform a similarity search of records based on an image embedding.
Args:
query (EmbeddingQuery): The embedding query parameters.
Returns:
List[FundusRecordSemanticSearchResult]: A list of search results.
"""
try:
query_embedding = np.array(query.query_embedding).tolist()
return vdb._fundus_record_image_similarity_search(
query_embedding=query_embedding,
search_in_collections=query.search_in_collections,
top_k=query.top_k,
# return_image=query.return_image,
# return_resolved_collection=query.return_parent_collection,
# return_embeddings=query.return_embeddings,
)
except Exception as e:
raise HTTPException(status_code=500, detail=str(e))
@router.post(
"/records/title_similarity_search",
response_model=list[FundusRecordSemanticSearchResult],
summary="Perform a similarity search of records based on a title embedding.",
tags=["search"],
)
def fundus_record_title_similarity_search(query: EmbeddingQuery):
"""
Perform a similarity search of records based on a title embedding.
Args:
query (EmbeddingQuery): The embedding query parameters.
Returns:
list[FundusRecordSemanticSearchResult]: A list of search results.
"""
try:
query_embedding = list(query.query_embedding)
return vdb._fundus_record_title_similarity_search(
query_embedding=query_embedding,
search_in_collections=query.search_in_collections,
top_k=query.top_k,
)
except Exception as e:
raise HTTPException(status_code=500, detail=str(e))
@router.post(
"/records/title_lexical_search",
response_model=list[FundusRecord],
summary="Perform a lexical search on `FundusRecord`s by title.",
tags=["search"],
)
def fundus_record_title_lexical_search(query: RecordLexicalSearchQuery):
"""
Endpoint to search `FundusRecord`s based on title.
Args:
query (RecordLexicalSearchQuery): The search parameters.
Returns:
list[FundusRecord]: A list of `FundusRecord`s matching the query.
"""
try:
# Pass parameters to the vector database
return vdb.fundus_record_title_lexical_search(
query=query.query,
collection_name=query.collection_name,
top_k=query.top_k,
)
except Exception as e:
raise HTTPException(status_code=500, detail=str(e))
@router.post(
"/collections/title_lexical_search",
response_model=list[FundusCollection],
summary="Perform a lexical search on `FundusCollection`s using a query string.",
tags=["search"],
)
def fundus_collection_lexical_search(query: LexicalSearchQuery):
"""
Perform a lexical search on `FundusCollection`s based on title.
Args:
query (LexicalSearchQuery): The search parameters.
Returns:
List[FundusCollection]: A list of matching collections.
"""
try:
return vdb._fundus_collection_lexical_search(
query=query.query,
top_k=query.top_k,
search_in_collection_name=query.search_in_collection_name,
search_in_title=query.search_in_title,
search_in_description=query.search_in_description,
search_in_german_title=query.search_in_german_title,
search_in_german_description=query.search_in_german_description,
)
except Exception as e:
raise HTTPException(status_code=500, detail=str(e))
@router.post(
"/collections/title_similarity_search",
response_model=list[FundusCollectionSemanticSearchResult],
summary="Perform a semantic similarity search on `FundusCollection`s based on their title.",
tags=["search"],
)
def fundus_collection_title_similarity_search(query: EmbeddingQuery):
"""
Perform a semantic similarity search on `FundusCollection`s based on their title.
Args:
query (EmbeddingQuery): The embedding query parameters.
Returns:
List[FundusCollectionSemanticSearchResult]: A list of search results.
"""
try:
query_embedding = list(query.query_embedding)
return vdb.fundus_collection_title_similarity_search(
query_embedding=query_embedding,
top_k=query.top_k,
)
except Exception as e:
raise HTTPException(status_code=500, detail=str(e))
@router.post(
"/collections/description_similarity_search",
response_model=list[FundusCollectionSemanticSearchResult], # Updated response model
summary="Perform a semantic similarity search on `FundusCollection`s based on their title description.",
tags=["search"],
)
def fundus_collection_description_similarity_search(query: EmbeddingQuery):
"""
Perform a semantic similarity search on `FundusCollection`s based on their description.
Args:
query (EmbeddingQuery): The embedding query parameters.
Returns:
List[FundusCollectionSemanticSearchResult]: A list of search results.
"""
try:
query_embedding = list(query.query_embedding)
return vdb.fundus_collection_description_similarity_search(
query_embedding=query_embedding,
top_k=query.top_k,
)
except Exception as e:
raise HTTPException(status_code=500, detail=str(e))
@router.post(
"/image_to_image_search",
response_model=list[FundusRecordSemanticSearchResult],
summary="Upload an image, process it, and perform a similarity search.",
tags=["image"],
)
async def image_to_image_search(file: UploadFile = File(...)):
"""
Upload an image, find its embedding, perform a similarity search, and return a list of matching records.
Args:
file (UploadFile): Uploaded image file.
Returns:
List[FundusRecordSemanticSearchResult]: A list of search results.
"""
try:
image_bytes = await file.read()
image_base64 = base64.b64encode(image_bytes).decode("utf-8")
# FundusMLClient for image embedding
embedding = ml_client.compute_image_embedding(image_base64, return_tensor="np")
if (
embedding is None
or not isinstance(embedding, (np.ndarray, list))
or len(embedding) == 0
):
raise HTTPException(
status_code=500, detail="Failed to retrieve embedding from ML server"
)
query_embedding = np.array(embedding).flatten().tolist()
# Search in all collections `search_in_collections=None`
search_query = EmbeddingQuery(
query_embedding=query_embedding, search_in_collections=None
)
search_results = vdb._fundus_record_image_similarity_search(
query_embedding=search_query.query_embedding,
search_in_collections=search_query.search_in_collections,
top_k=search_query.top_k,
)
return search_results
except Exception as e:
raise HTTPException(status_code=500, detail=str(e))