Cargo.toml

[package]
name = "htsget-search"
version = "0.12.6"
rust-version = "1.88"
authors = ["Christian Perez Llamas <chrispz@gmail.com>", "Marko Malenic <mmalenic1@gmail.com>", "Roman Valls Guimera <brainstorm@nopcode.org>"]
edition = "2024"
description = "The primary mechanism by which htsget-rs interacts with, and processes bioinformatics files. It does this by using noodles to query files and their indices."
license = "MIT"
homepage = "https://github.com/umccr/htsget-rs/blob/main/htsget-search/README.md"
repository = "https://github.com/umccr/htsget-rs"

[features]
aws = ["htsget-storage/aws", "htsget-config/aws", "htsget-test/aws"]
url = ["htsget-storage/url", "htsget-config/url", "htsget-test/url"]
experimental = ["htsget-storage/experimental", "htsget-config/experimental", "htsget-test/experimental"]
default = []

[dependencies]
# Async
tokio = { version = "1", features = ["macros", "rt-multi-thread"] }
futures = { version = "0.3" }
futures-util = "0.3"
async-trait = "0.1"

# Noodles
noodles = { version = "0.104", features = ["async", "core", "bgzf", "bam", "bcf", "cram", "csi", "sam", "tabix", "vcf"] }

# Error control, tracing, config
http = "1"
tracing = "0.1"

htsget-config = { version = "0.21.0", path = "../htsget-config", default-features = false }
htsget-storage = { version = "0.5.6", path = "../htsget-storage", default-features = false }

[dev-dependencies]
tempfile = "3"

criterion = { version = "0.8", features = ["async_tokio"] }
htsget-test = { path = "../htsget-test", features = ["http"], default-features = false }

[[bench]]
name = "search-benchmarks"
harness = false
path = "benches/search_benchmarks.rs"