indicate-data-provider-containers/compose.yml at main · umg-minai/indicate-data-provider-containers · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
services:

  # The database stores results generated by the cql-on-omop service.
  # The results are read by the data-exchange service.
  database:
    build: database
    shm_size: 128mb
    environment:
      POSTGRES_PASSWORD_FILE: /run/secrets/database-password
    secrets:
      - source: target-database-password
        target: database-password
    networks:
      - database
    volumes:
      - ./database-data:/var/lib/postgresql

  # The cql-on-omop service reads from the clinical database, computes
  # quality indicators and stores results in the database service.
  cql-on-omop:
    build: cql-on-omop
    env_file:
      - source-database.env
      - target-database.env
    secrets:
      - source-database-password
      - target-database-password
    stop_signal: SIGQUIT
    volumes:
      - ./crontab:/app/crontab:ro
    networks:
      - database
      - trigger
    depends_on:
      - database
      - data-exchange

  # The data-exchange service takes quality indicator results from the
  # database service and sends them to the INDICATE hub.
  data-exchange:
    build: data-exchange
    env_file:
      - target-database.env
      - data-exchange.env
    secrets:
      - source: target-database-password # TODO: change "source" and "target"
        target: database-password
    networks:
      - database
      - trigger
    volumes:
      - ./provider-id:/run/provider-id
    depends_on:
      - database

  # The dashboard services presents a web-based dashboard with quality
  # indicator results from all data providers. These results are
  # fetched from the INDICATE hub using the data exchange API. Later,
  # the dashboard could also present patient-level results for just
  # the local data provider.
  dashboard:
    image: ghcr.io/umg-minai/indicate-dashboard:latest
    env_file: data-exchange.env
    environment:
      LISTEN_ADDRESS:     0.0.0.0
      LISTEN_PORT:        8080
      PROVIDER_ID_FILE:   /run/provider-id/id # TODO: should wait until the id is generated
      PROVIDER_NAME_FILE: /run/provider-id/name
    volumes:
      - ./provider-id:/run/provider-id
    ports:
      - 8000:8080
    depends-on:
      - data-exchange # for provider id generation but this is racy

secrets:
  source-database-password:
    file: source-database-password
  target-database-password:
    file: target-database-password

volumes:
  data:
    external: no

networks:
  database:
    external: no
  trigger:
    external: no