uncomment dotenv and moved gromacs nb

Author: qcampbel

mdcrow/agent/agent.py

@@ -1,7 +1,7 @@
 import os
 from datetime import datetime
 
-# from dotenv import load_dotenv
+from dotenv import load_dotenv
 from langchain.agents import AgentExecutor, OpenAIFunctionsAgent
 from langchain.agents.structured_chat.base import StructuredChatAgent
 
@@ -10,7 +10,7 @@
 from .memory import MemoryManager
 from .prompt import openaifxn_prompt, structured_prompt
 
-# load_dotenv()
+load_dotenv()
 
 
 class AgentType:

mdcrow/tools/maketools.py

@@ -2,7 +2,7 @@
 
 import numpy as np
 
-# from dotenv import load_dotenv
+from dotenv import load_dotenv
 from langchain import agents
 from langchain.base_language import BaseLanguageModel
 from langchain_openai import OpenAIEmbeddings
@@ -69,7 +69,7 @@ def make_all_tools(
     human=False,
     modifysim_no_run=False,
 ):
-    # load_dotenv()
+    load_dotenv()
     all_tools = []
     path_instance = PathRegistry.get_instance()  # get instance first
     if llm: