usegalaxy-be-tools/belgium-custom.yaml.lock at master · usegalaxy-be/usegalaxy-be-tools · GitHub

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install_repository_dependencies: 'true'
install_resolver_dependencies: 'true'
install_tool_dependencies: 'false'
tools:
- name: data_manager_fetch_genome_dbkeys_all_fasta
  owner: devteam
  revisions:
  - 4a82d1157b14
  - 4d3eff1bc421
  - b1bc53e9bbc5
  tool_panel_section_label: None
- name: data_manager_bowtie2_index_builder
  owner: devteam
  revisions:
  - 39865c64a4e1
  - 76672b83d42d
  - 83da94c0e4a6
  - 9dd107db92c2
  tool_panel_section_label: None
- name: data_manager_hisat2_index_builder
  owner: iuc
  revisions:
  - a04cebcd77f4
  - d210e1f185bd
  - d74c740bdb25
  tool_panel_section_label: None
- name: data_manager_fetch_gff
  owner: ieguinoa
  revisions:
  - 0bdfe2e85fb0
  tool_panel_section_label: None
- name: data_manager_fetch_tx2gene
  owner: ieguinoa
  revisions:
  - c380b7da5b65
  tool_panel_section_label: None
- name: data_manager_salmon_index_builder
  owner: ieguinoa
  revisions:
  - 3888ec1918d0
  - 9004217cddf4
  tool_panel_section_label: None
- name: data_manager_star_index_builder
  owner: iuc
  revisions:
  - 6ef6520f14fc
  - 71c994a11f71
  - c520a52b5174
  - d3879aceba04
  - d63c1442407f
  tool_panel_section_label: None
- name: ribo_tools
  owner: rlegendre
  revisions:
  - 01b945ba3697
  tool_panel_section_label: RNA Analysis
- name: riboseqr_wrapper
  owner: vimalkumarvelayudhan
  revisions:
  - 5a242f289347
  tool_panel_section_label: RNA Analysis
- name: htseq_count
  owner: lparsons
  revisions:
  - 4418229c501e
  - 7f5a8d427b39
  - 8f6836089479
  - 916cb26bd9d3
  - fb117b3ee99a
  tool_panel_section_label: RNA Analysis
- name: trimmomatic
  owner: pjbriggs
  revisions:
  - 32f1f56bd970
  - 51b771646466
  - 898b67846b47
  - b9aaed85cbd1
  - d94aff5ee623
  tool_panel_section_label: FASTA/FASTQ manipulation
- name: rseqc
  owner: nilesh
  revisions:
  - 1a052c827e88
  - 27e16a30667a
  - 473382134e56
  - dbedfc5f5a3c
  - f242ee103277
  tool_panel_section_label: RNA Analysis
- name: sortmerna
  owner: rnateam
  revisions:
  - 10b84b577117
  - eb35257d2e29
  tool_panel_section_label: Metagenomics
- name: metaphlan2
  owner: iuc
  revisions:
  - 8c82c4d90cc6
  - f60773e921fa
  tool_panel_section_label: Metagenomic Analysis
- name: metaphlan2krona
  owner: iuc
  revisions:
  - ebb74774457e
  - fdbd63e92b01
  tool_panel_section_label: Metagenomic Analysis
- name: format_metaphlan2_output
  owner: bebatut
  revisions:
  - 1e74cb2c8e67
  - 2bfa9b200600
  - 2c87f56bd53a
  tool_panel_section_label: Metagenomic Analysis
- name: group_humann2_uniref_abundances_to_go
  owner: bebatut
  revisions:
  - cad28d7b49d2
  - fd2cf7c9d3ec
  tool_panel_section_label: Metagenomic Analysis
- name: export2graphlan
  owner: iuc
  revisions:
  - 635c90a27692
  - b16989c1e3a7
  - ed1becc01910
  tool_panel_section_label: Graph/Display Data
- name: graphlan
  owner: iuc
  revisions:
  - 6e8eb0c0d91f
  - 8f62f666dcb6
  - a490b70e46fc
  tool_panel_section_label: Graph/Display Data
- name: graphlan_annotate
  owner: iuc
  revisions:
  - 5d6f8f0bef7c
  - 97e3b735ed22
  - cf1df6b2220a
  tool_panel_section_label: Graph/Display Data
- name: cutadapt
  owner: lparsons
  revisions:
  - 01d94df2e32a
  - 093678460093
  - 49370cb85f0f
  - 5915ea1ec9b1
  - 5eb7e84243f2
  - 80766b36005d
  - 8e264b67a8c0
  - aa784cb3810d
  - c0b2c2e39c9c
  tool_panel_section_label: FASTA/FASTQ
- name: je_demultiplex
  owner: gbcs-embl-heidelberg
  revisions:
  - bd3cdf128bcb
  tool_panel_section_label: FASTA/FASTQ
- name: suite_mageck
  owner: iuc
  revisions:
  - 1aaea8924858
  tool_panel_section_label: Genome editing
- name: metagenomeseq_normalization
  owner: iuc
  revisions:
  - d16f7cc26516
  tool_panel_section_label: Text Manipulation
- name: salmon
  owner: bgruening
  revisions:
  - 30d90b851d3c
  - 49121db48873
  - 6b0ba6de1424
  - f4d5237a84f6
  tool_panel_section_label: RNA Analysis
- name: data_manager_sortmerna_database_downloader
  owner: rnateam
  revisions:
  - 7d2252852f96
  tool_panel_section_label: None
- name: data_manager_metaphlan2_database_downloader
  owner: iuc
  revisions:
  - 83f07f40b200
  tool_panel_section_label: None
- name: crispresso2
  owner: ieguinoa
  revisions:
  - a378f3ee0137
  - eb5dbcfac76b
  tool_panel_section_label: Genome editing
- name: data_manager_humann2_database_downloader
  owner: iuc
  revisions:
  - ff9cf22838d4
  tool_panel_section_label: None
- name: mimodd_snpeff
  owner: wolma
  revisions:
  - b6da1066b2fd
  tool_panel_section_label: MiModD
- name: lotus2
  owner: earlhaminst
  revisions:
  - 12599a8dd22f
  - 28f284a679ce
  - 469095a58c15
  - 7f33525b85d0
  - eb7baf1f72ca
  tool_panel_section_label: Metagenomic Analysis
- name: mrbayes
  owner: nml
  revisions:
  - 905d00fb5243
  tool_panel_section_label: Phylogenetics
- name: mafft
  owner: rnateam
  revisions:
  - 0a507f4bd19a
  - 1233363389c1
  - 8e649f27aa0d
  - bcfce5aac49c
  - bf28a8cff401
  - c5908940967d
  - f0d493f8f84f
  tool_panel_section_label: Multiple Alignments
- name: ucsb_phylogenetics
  owner: ucsb-phylogenetics
  revisions:
  - 51904e90a6b2
  tool_panel_section_label: Phylogenetics
- name: braker
  owner: genouest
  revisions:
  - ac13de106677
  - ca7c12566894
  - f432bb944473
  tool_panel_section_label: Annotation
- name: interproscan
  owner: bgruening
  revisions:
  - 0cd163d805e3
  - 74810db257cc
  - 98cafcbd2578
  - c55643c3d813
  tool_panel_section_label: Annotation
- name: prokka
  owner: crs4
  revisions:
  - 8a22554cdde2
  tool_panel_section_label: Annotation
- name: data_manager_eggnog_mapper_abspath
  owner: galaxyp
  revisions:
  - 2aec8d30ff42
  - 81a286e4c5a2
  tool_panel_section_label: Data Managers
- name: eggnog_mapper
  owner: galaxyp
  revisions:
  - 02439eb2b37d
  - 2667d24b58a0
  - 63662ae295d6
  - 9d1fbff733cf
  - d9c3016f7283
  tool_panel_section_label: Proteomics
- name: repeat_masker
  owner: bgruening
  revisions:
  - 39b40a9a6296
  - 3f987772e283
  - 438f65cb1d14
  - ba6d2c32f797
  tool_panel_section_label: Annotation
- name: augustus
  owner: bgruening
  revisions:
  - 09855551d713
  - 0fc0f9cf035a
  - 28433faa6e42
  - 534814b64234
  - bd0e53f3a891
  tool_panel_section_label: Annotation
- name: augustus_training
  owner: bgruening
  revisions:
  - 1fbb1135da16
  - 2fdc599f2814
  - 6519ebe25019
  - aada0deea587
  - dc027fa56d55
  - f1e653756174
  tool_panel_section_label: Annotation
- name: glimmer_build_icm
  owner: bgruening
  revisions:
  - 15ad71e21010
  - cc51783dc93c
  - e903e26c014d
  tool_panel_section_label: Annotation
- name: glimmer_knowledge_based
  owner: bgruening
  revisions:
  - 21d0af260f11
  - ce89c473666d
  tool_panel_section_label: Annotation
- name: glimmer_not_knowledge_based
  owner: bgruening
  revisions:
  - 2529762847c3
  - 73c58e2debd0
  - 75cedbd8cf1b
  tool_panel_section_label: Annotation
- name: glimmer_gbk_to_orf
  owner: bgruening
  revisions:
  - 04861c9bbf45
  - 44dc09edd97b
  tool_panel_section_label: Annotation
- name: regex_replace
  owner: kellrott
  revisions:
  - 9a77d5fca67c
  tool_panel_section_label: Text Manipulation
- name: regex_find_replace
  owner: galaxyp
  revisions:
  - 399da6b5ec21
  - 503bcd6ebe4b
  - ae8c4b2488e7
  tool_panel_section_label: Text Manipulation
- name: ncbi_datasets
  owner: iuc
  revisions:
  - 18eed8fa7f23
  - 1a7773882d2c
  - 6ba50cbabbb7
  - 6c829a430475
  - 94e32337ba54
  - 95be88b49f4e
  - a6a475ed58cb
  - bc18e25d4204
  - d951c5b0edd1
  tool_panel_section_label: Get Data
- name: clipkit
  owner: padge
  revisions:
  - 34f21474cdea
  - '770695339600'
  tool_panel_section_label: Phylogenetics
- name: trimal
  owner: padge
  revisions:
  - 0d53577b962f
  - 4769baf47b8d
  - 98944ec4bfc7
  tool_panel_section_label: Multiple Alignments
- name: cdhit
  owner: bebatut
  revisions:
  - 93f25d52cfa5
  tool_panel_section_label: Multiple Alignments
- name: ena_upload
  owner: iuc
  revisions:
  - '440074098911'
  - 5cb6146337d8
  - 6f6537780379
  - 7ca4ed416391
  - 89329e428dc6
  - 9e2df763086c
  tool_panel_section_label: Send Data
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: load_ref_data
  owner: ieguinoa
  revisions:
  - cccb98962d4c
  tool_panel_section_label: Get Data
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: sra_tools
  owner: iuc
  revisions:
  - 69ebb7f46e45
  - 8848455c0270
  - e407b9da183a
  - f5ea3ce9b9b0
  tool_panel_section_label: Get Data
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: spocc_occ
  owner: ecology
  revisions:
  - f64b3c1a80a6
  - f9d76a46799a
  tool_panel_section_label: Get Data
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: iedb_api
  owner: iuc
  revisions:
  - 1911ec100221
  - 7ed6dda64a81
  - 8c6526a46319
  - e95d3221b7f0
  tool_panel_section_label: Get Data
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: ega_download_client
  owner: iuc
  revisions:
  - 7d87a9d58aa1
  - caf213d51d6c
  tool_panel_section_label: Get Data
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: ncbi_acc_download
  owner: iuc
  revisions:
  - 1c58de56d587
  - e063168e0a81
  tool_panel_section_label: Get Data
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: ebi_metagenomics_run_downloader
  owner: iuc
  revisions:
  - a1ef6c88ee37
  tool_panel_section_label: Get Data
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: ebi_search_rest_results
  owner: iuc
  revisions:
  - 42d5e40fcd0b
  tool_panel_section_label: Get Data
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: ena_webin_cli
  owner: ieguinoa
  revisions:
  - 7d751b5943b0
  tool_panel_section_label: Send Data
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: split_file_to_collection
  owner: bgruening
  revisions:
  - 0046692724f9
  - 2dae863c8f42
  - 6cbe2f30c2d7
  tool_panel_section_label: Collection Operations
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: collection_element_identifiers
  owner: iuc
  revisions:
  - 3e27acfa4830
  - d3c07d270a50
  tool_panel_section_label: Collection Operations
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: table_compute
  owner: iuc
  revisions:
  - 56a8da1f2243
  - 60ff16842fcd
  - cd36d6e45e29
  tool_panel_section_label: Text Manipulation
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: text_processing
  owner: bgruening
  revisions:
  - 6073bb457ec0
  - 9ff72e942410
  - a6f147a050a2
  - ab83aa685821
  - c41d78ae5fee
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