Overall, the current version of "api_graph.png" looks good for the modules based on curvelets-based fiber analysis. However, the modules based on individual fiber extraction algorithm (CT-FIRE) are off as well others. Below are the details:
(1) getFIRE.m needs to be connected to the processImage* functions to load CT-FIRE output of individual fibers.
(2) ctFIRE related functions needs to be moved from the low-level to high-level or Mid-level
(3) high level can include all the individual modules and associated sub-modules? For example, CT-FIRE, CT-FIRE/advanced analysis module, cell-fiber analysis/cell segmentation, ROI management, tumor annotation and measurements
(4) batch_curveAlign, CurvePrep.m and TumorTrace/newCurve.m are not used any longer in the current version of CurveAlign
Overall, the current version of "api_graph.png" looks good for the modules based on curvelets-based fiber analysis. However, the modules based on individual fiber extraction algorithm (CT-FIRE) are off as well others. Below are the details:
(1) getFIRE.m needs to be connected to the processImage* functions to load CT-FIRE output of individual fibers.
(2) ctFIRE related functions needs to be moved from the low-level to high-level or Mid-level
(3) high level can include all the individual modules and associated sub-modules? For example, CT-FIRE, CT-FIRE/advanced analysis module, cell-fiber analysis/cell segmentation, ROI management, tumor annotation and measurements
(4) batch_curveAlign, CurvePrep.m and TumorTrace/newCurve.m are not used any longer in the current version of CurveAlign