Update pkgdown documentation

[sdhutchins]

ToDo

• Add our custom pkgdown theme (https://github.com/vallenderlab/vallender-pkgdown-theme)
• Add vignettes
• Ensure changelog/news.md is added
• Order functions into groups for the reference page i.e. data wrangling, visualization, utils etc.

More ToDos via @grabear #15 (comment)

• Add an About tab on the navbar
  • Add a leaflet widget
• Add vignette's for shaurita's functions
  • Stacked Bar
  • Ordination
  • Permanova
  • Alpha Diversity
• Hunt down pkgdown warnings:
  • 
  • 
• Add search
• Look at some of the pkgdown articles to get any other ideas

[sdhutchins]

Rebuild pkgdown docs

library(pkgdown)
build_site()

To build or create a new vignette

library(pkgdown)
build_article("vignette_name")

[grabear]

Can we merge the "test" branch? @sdhutchins I'm working on vignettes on my current branch "pkg-doc-branch" and I wanted to start messing with pkgdown.

[grabear]

Or can I merge the dev-master into test, and then test into my own branch?

[sdhutchins]

I think the test branch might be too messy to merge - I did a lot of weird things over there if I recall correctly (non pkgdown things)...

If you want I can do a quick pkgdown branch with just some of the base pkgdown things I implemented in the test branch.

[grabear]

That would be legit!

[sdhutchins]

Also, check out this package's pkgdown. Nice example imo.

https://valr.hesselberthlab.org/index.html

[grabear]

Do you know if there is a quicker way to build the reference based on the roxygen tag @family?? @sdhutchins

That's what I'm going to do anyway, but I can't find anything in the docs (so far).

[sdhutchins]

Yes/kinda? check out this link: https://pkgdown.r-lib.org/reference/build_reference.html#yaml-config

[sdhutchins]

[sdhutchins]

reference:
- title: Data Visualization
  contents:
  - ends_with("_plot")

I don't know how helpful that will be....