finetuningQADistilBERT.py

# Pre-processing the data

from datasets import load_dataset

raw_datasets = load_dataset("squad")

raw_datasets

from transformers import AutoTokenizer

tokenizer = AutoTokenizer.from_pretrained("distilbert-base-uncased")

tokenizer.is_fast

max_length = 384
stride = 128

def preprocess_training_examples(examples):
    questions = [q.strip() for q in examples["question"]]
    inputs = tokenizer(
        questions,
        examples["context"],
        max_length=max_length,
        truncation="only_second",
        stride=stride,
        return_overflowing_tokens=True,
        return_offsets_mapping=True,
        padding="max_length",
    )

    offset_mapping = inputs.pop("offset_mapping")
    sample_map = inputs.pop("overflow_to_sample_mapping")
    answers = examples["answers"]
    start_positions = []
    end_positions = []

    for i, offset in enumerate(offset_mapping):
        sample_idx = sample_map[i]
        answer = answers[sample_idx]
        start_char = answer["answer_start"][0]
        end_char = answer["answer_start"][0] + len(answer["text"][0])
        sequence_ids = inputs.sequence_ids(i)

        # Find the start and end of the context
        idx = 0
        while sequence_ids[idx] != 1:
            idx += 1
        context_start = idx
        while sequence_ids[idx] == 1:
            idx += 1
        context_end = idx - 1

        # If the answer is not fully inside the context, label is (0, 0)
        if offset[context_start][0] > start_char or offset[context_end][1] < end_char:
            start_positions.append(0)
            end_positions.append(0)
        else:
            # Otherwise it's the start and end token positions
            idx = context_start
            while idx <= context_end and offset[idx][0] <= start_char:
                idx += 1
            start_positions.append(idx - 1)

            idx = context_end
            while idx >= context_start and offset[idx][1] >= end_char:
                idx -= 1
            end_positions.append(idx + 1)

    inputs["start_positions"] = start_positions
    inputs["end_positions"] = end_positions
    return inputs

train_dataset = raw_datasets["train"].map(
    preprocess_training_examples,
    batched=True,
    remove_columns=raw_datasets["train"].column_names,
)
len(raw_datasets["train"]), len(train_dataset)

def preprocess_validation_examples(examples):
    questions = [q.strip() for q in examples["question"]]
    inputs = tokenizer(
        questions,
        examples["context"],
        max_length=max_length,
        truncation="only_second",
        stride=stride,
        return_overflowing_tokens=True,
        return_offsets_mapping=True,
        padding="max_length",
    )

    sample_map = inputs.pop("overflow_to_sample_mapping")
    example_ids = []

    for i in range(len(inputs["input_ids"])):
        sample_idx = sample_map[i]
        example_ids.append(examples["id"][sample_idx])

        sequence_ids = inputs.sequence_ids(i)
        offset = inputs["offset_mapping"][i]
        inputs["offset_mapping"][i] = [
            o if sequence_ids[k] == 1 else None for k, o in enumerate(offset)
        ]

    inputs["example_id"] = example_ids
    return inputs

validation_dataset = raw_datasets["validation"].map(
    preprocess_validation_examples,
    batched=True,
    remove_columns=raw_datasets["validation"].column_names,
)
len(raw_datasets["validation"]), len(validation_dataset)

"""## Fine-Tuning - Pre-processing"""

small_eval_set = raw_datasets["validation"].select(range(100))
trained_checkpoint = "distilbert-base-cased-distilled-squad"

tokenizer = AutoTokenizer.from_pretrained(trained_checkpoint)
eval_set = small_eval_set.map(
    preprocess_validation_examples,
    batched=True,
    remove_columns=raw_datasets["validation"].column_names,
)

tokenizer = AutoTokenizer.from_pretrained("distilbert-base-uncased")

import torch
from transformers import AutoModelForQuestionAnswering

eval_set_for_model = eval_set.remove_columns(["example_id", "offset_mapping"])
eval_set_for_model.set_format("torch")

device = torch.device("cuda") if torch.cuda.is_available() else torch.device("cpu")
batch = {k: eval_set_for_model[k].to(device) for k in eval_set_for_model.column_names}
trained_model = AutoModelForQuestionAnswering.from_pretrained(trained_checkpoint).to(
    device
)

with torch.no_grad():
    outputs = trained_model(**batch)

start_logits = outputs.start_logits.cpu().numpy()
end_logits = outputs.end_logits.cpu().numpy()

import collections

example_to_features = collections.defaultdict(list)
for idx, feature in enumerate(eval_set):
    example_to_features[feature["example_id"]].append(idx)

import numpy as np

n_best = 20
max_answer_length = 30
predicted_answers = []

for example in small_eval_set:
    example_id = example["id"]
    context = example["context"]
    answers = []

    for feature_index in example_to_features[example_id]:
        start_logit = start_logits[feature_index]
        end_logit = end_logits[feature_index]
        offsets = eval_set["offset_mapping"][feature_index]

        start_indexes = np.argsort(start_logit)[-1 : -n_best - 1 : -1].tolist()
        end_indexes = np.argsort(end_logit)[-1 : -n_best - 1 : -1].tolist()
        for start_index in start_indexes:
            for end_index in end_indexes:
                # Skip answers that are not fully in the context
                if offsets[start_index] is None or offsets[end_index] is None:
                    continue
                # Skip answers with a length that is either < 0 or > max_answer_length.
                if (
                    end_index < start_index
                    or end_index - start_index + 1 > max_answer_length
                ):
                    continue

                answers.append(
                    {
                        "text": context[offsets[start_index][0] : offsets[end_index][1]],
                        "logit_score": start_logit[start_index] + end_logit[end_index],
                    }
                )

    best_answer = max(answers, key=lambda x: x["logit_score"])
    predicted_answers.append({"id": example_id, "prediction_text": best_answer["text"]})

import evaluate

metric = evaluate.load("squad")

from tqdm.auto import tqdm


def compute_metrics(start_logits, end_logits, features, examples):
    example_to_features = collections.defaultdict(list)
    for idx, feature in enumerate(features):
        example_to_features[feature["example_id"]].append(idx)

    predicted_answers = []
    for example in tqdm(examples):
        example_id = example["id"]
        context = example["context"]
        answers = []

        # Loop through all features associated with that example
        for feature_index in example_to_features[example_id]:
            start_logit = start_logits[feature_index]
            end_logit = end_logits[feature_index]
            offsets = features[feature_index]["offset_mapping"]

            start_indexes = np.argsort(start_logit)[-1 : -n_best - 1 : -1].tolist()
            end_indexes = np.argsort(end_logit)[-1 : -n_best - 1 : -1].tolist()
            for start_index in start_indexes:
                for end_index in end_indexes:
                    # Skip answers that are not fully in the context
                    if offsets[start_index] is None or offsets[end_index] is None:
                        continue
                    # Skip answers with a length that is either < 0 or > max_answer_length
                    if (
                        end_index < start_index
                        or end_index - start_index + 1 > max_answer_length
                    ):
                        continue

                    answer = {
                        "text": context[offsets[start_index][0] : offsets[end_index][1]],
                        "logit_score": start_logit[start_index] + end_logit[end_index],
                    }
                    answers.append(answer)

        # Select the answer with the best score
        if len(answers) > 0:
            best_answer = max(answers, key=lambda x: x["logit_score"])
            predicted_answers.append(
                {"id": example_id, "prediction_text": best_answer["text"]}
            )
        else:
            predicted_answers.append({"id": example_id, "prediction_text": ""})

    theoretical_answers = [{"id": ex["id"], "answers": ex["answers"]} for ex in examples]
    return metric.compute(predictions=predicted_answers, references=theoretical_answers)

compute_metrics(start_logits, end_logits, eval_set, small_eval_set)

"""## Fine-Tuning - Training"""

model = AutoModelForQuestionAnswering.from_pretrained("distilbert-base-uncased")

from transformers import TrainingArguments

args = TrainingArguments(
    "bert-finetuned-squad",
    evaluation_strategy="epoch",
    save_strategy="epoch",
    learning_rate=2e-5,
    num_train_epochs=3,
    weight_decay=0.01,
    fp16=True,    
)

from transformers import Trainer

trainer = Trainer(
    model=model,
    args=args,
    train_dataset=train_dataset,
    eval_dataset=validation_dataset,
    tokenizer=tokenizer,
)

# from carbontracker.tracker import CarbonTracker

# tracker = CarbonTracker(epochs=1, verbose=2)

# # Training loop

# for epoch in range(1):
#     tracker.epoch_start()

#     #insert training        
#     trainer.train()

#     tracker.epoch_end()

# tracker.stop()

import eco2ai

tracker = eco2ai.Tracker(
    project_name="QuestionAnswering", 
    experiment_description="fine-tuning DistilBert on Squad",
    file_name="emission_qa.csv"
    )

tracker.start()

trainer.train()

tracker.stop()

predictions, _, _ = trainer.predict(validation_dataset)
start_logits, end_logits = predictions
print(compute_metrics(start_logits, end_logits, validation_dataset, raw_datasets["validation"]))