gimmemotifs/.travis.yml at master · vanheeringen-lab/gimmemotifs · GitHub

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## run travis on these branches (and all PRs)
branches:
  only:
  - master
  - develop

os: linux
dist: focal
language: minimal

env:
  global:
    - CC_TEST_REPORTER_ID=3865090108d29191b1d34760d2ed5825d67b7566f0f87090e688b7513fdef063

before_install:
  # setup miniforge
  - wget -O Miniforge3.sh "https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-$(uname)-$(uname -m).sh"
  - bash Miniforge3.sh -b -p "${HOME}/conda" > /dev/null
  - source "${HOME}/conda/etc/profile.d/conda.sh"
  - source "${HOME}/conda/etc/profile.d/mamba.sh"
  - mamba activate

install:
  - mamba env create -n gimme -f requirements.yaml
  - mamba activate gimme
  - pip install --no-deps --no-cache-dir --use-pep517 -v -e .

before_script:
  # install Code Climate test coverage reporter
  - wget -O cc-test-reporter https://codeclimate.com/downloads/test-reporter/test-reporter-latest-linux-amd64
  - chmod +x ./cc-test-reporter
  - ./cc-test-reporter before-build

script:
  # generate the config and print the cache location
  - python -c 'from gimmemotifs.config import CACHE_DIR;print(CACHE_DIR)'
  # run the tests
  - pytest -vvv --disable-pytest-warnings --cov=scripts --cov=gimmemotifs --cov-report=xml test/

after_script:
  # upload test coverage data to Code Climate
  - ./cc-test-reporter after-build -t coverage.py --exit-code $TRAVIS_TEST_RESULT