error during installation

[itsvenu]

Hi Simon,

I was trying to install scepia with pip but I'm facing the following error

pip install git+https://github.com/vanheeringen-lab/scepia.git

Error

  Failed building wheel for sklearn-contrib-lightning
  Running setup.py clean for sklearn-contrib-lightning
Successfully built scepia
Failed to build sklearn-contrib-lightning
...
...
  error: invalid argument '-std=c99' not allowed with 'C++'
  error: Command "g++ -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -I/Users/venu/anaconda3/include -arch x86_64 -I/Users/venu/anaconda3/include -arch x86_64 -std=c99 -I/Users/venu/anaconda3/lib/python3.7/site-packages/numpy/core/include -I/private/var/folders/17/cwzq14vx6fb2m4kzc1ln2tsm0000gn/T/pip-install-_xwmsqoa/sklearn-contrib-lightning/lightning/impl/randomkit -I/Users/venu/anaconda3/lib/python3.7/site-packages/numpy/core/include -I/Users/venu/anaconda3/include/python3.7m -c lightning/impl/adagrad_fast.cpp -o build/temp.macosx-10.7-x86_64-3.7/lightning/impl/adagrad_fast.o -MMD -MF build/temp.macosx-10.7-x86_64-3.7/lightning/impl/adagrad_fast.o.d" failed with exit status 1

Are there any additional dependencies I should be careful about?

Thank you.

[simonvh]

Have you created a conda environment first? This should work:

conda create -n scepia python=3 adjusttext biofluff gimmemotifs=0.14.0 scanpy louvain loguru pyarrow ipywidgets nb_conda
conda activate scepia
pip install git+https://github.com/vanheeringen-lab/scepia.git@0.3.1

[itsvenu]

Aw, the installation is working. Thanks a lot.

After installation I tried loading scepia module but it is still saying 'there is no module scepia'.

[simonvh]

Sorry, I missed this comment earlier. Did you get it to work?