image-tools/transforms/images/polus-image-registration-plugin/plugin.json at 94d9dc3d47270a08d9baa1e7b3395aa46cc67239 · vanlam2308/image-tools · GitHub

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{
  "name": "Image Registration",
  "version": "0.3.6",
  "title": "Image Registration",
  "description": "This plugin registers an image collection",
  "author": "Gauhar Bains (gauhar.bains@labshare.org), Nick Schaub (nick.schaub@nih.gov) ",
  "institution": "National Center for Advancing Translational Sciences, National Institutes of Health",
  "repository": "https://github.com/labshare/polus-plugins",
  "website": "https://ncats.nih.gov/preclinical/core/informatics",
  "citation": "",
  "containerId": "polusai/image-registration-plugin:0.3.6",
  "inputs": [
    {
      "name": "inpDir",
      "type": "collection",
      "description": "Input image collection to be processed by this plugin",
      "required": true
    },
    {
      "name": "filePattern",
      "type": "string",
      "description": "Filename pattern used to separate data",
      "required": true
    },
    {
      "name": "template",
      "type": "string",
      "description": "Template image to be used for image registration",
      "required": true
    },
    {
      "name": "registrationVariable",
      "type": "string",
      "description": "variable to help identify which images need to be registered to each other",
      "required": true
    },
    {
      "name": "TransformationVariable",
      "type": "string",
      "description": "variable to help identify which images have similar transformation",
      "required": true
    },
    {
      "name": "method",
      "type": "enum",
      "description": "Projective (8 degrees of freedom), Affine (6 degrees of freedom), Partial Affine (4 degrees of freedom)",
      "options": {
        "values": [
          "Projective",
          "Affine",
          "PartialAffine"
        ]
      }
    }
  ],
  "outputs": [
    {
      "name": "outDir",
      "type": "collection",
      "description": "Output collection"
    }
  ],
  "ui": [
    {
      "key": "inputs.inpDir",
      "title": "Input collection",
      "description": "Input image collection to be processed by this plugin"
    },
    {
      "key": "inputs.filePattern",
      "title": "Filename pattern",
      "description": "Filename pattern used to separate data"
    },
    {
      "key": "inputs.template",
      "title": "Template Image",
      "description": "Template image to be used for image registration"
    },
    {
      "key": "inputs.registrationVariable",
      "title": "Registration Variable",
      "description": "variable to help identify which images need to be registered to each other"
    },
    {
      "key": "inputs.TransformationVariable",
      "title": "Similar Transformation Variable",
      "description": "variable to help identify which images have similar transformation"
    },
    {
      "key": "inputs.method",
      "title": "Deformation method",
      "description": "Projective (8 degrees of freedom), Affine (6 degrees of freedom), Partial Affine (4 degrees of freedom)"
    }
  ]
}