replace preadator, update packages for python 3.13

update gitignore

update Dockerfile, pyproject.toml

Author: vanlam2308

.gitignore

@@ -184,6 +184,8 @@ uv.lock
 #husky
 node_modules
 
+#uv 
+transforms/images/*/uv.lock
 
 # uv lockfiles (generated; ignore in all nested projects)
 **/uv.lock

transforms/images/binary-operations-tool/.bumpversion.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.5.6-dev0
+current_version = 0.5.4-dev0
 commit = True
 tag = False
 parse = (?P<major>\d+)\.(?P<minor>\d+)\.(?P<patch>\d+)(\-(?P<release>[a-z]+)(?P<dev>\d+))?

transforms/images/binary-operations-tool/README.md

@@ -1,4 +1,4 @@
-# Binary Operations Plugin (v0.5.6-dev0)
+# Binary Operations Plugin (v0.5.4-dev0)
 
 This WIPP plugin does Morphological Image Processing on binary and instance labelled images.
 The operations available are:

transforms/images/binary-operations-tool/VERSION

@@ -1 +1 @@
-0.5.6-dev0
+0.5.4-dev0

transforms/images/binary-operations-tool/plugin.json

@@ -1,7 +1,7 @@
 {
   "name": "Binary Operations Plugin",
-  "version": "0.5.6-dev0",
-  "containerId": "polusai/binary-operations-tool:0.5.6-dev0",
+  "version": "0.5.4-dev0",
+  "containerId": "polusai/binary-operations-tool:0.5.4-dev0",
   "title": "Binary Operations Plugin",
   "description": "Everything you need to start a WIPP plugin.",
   "author": "Nick Schaub (nick.schaub@nih.gov), Madhuri Vihani",

transforms/images/binary-operations-tool/pyproject.toml

@@ -5,7 +5,7 @@ requires-python = ">=3.11"
 
 [tool.poetry]
 name = "polus-images-transforms-images-binary-operations"
-version = "0.5.6-dev0"
+version = "0.5.4-dev0"
 description = ""
 authors = ["nicholas-schaub <nick.schaub@nih.gov>", "Madhuri Vihani"]
 readme = "README.md"

transforms/images/binary-operations-tool/src/polus/images/transforms/images/binary_operations/__init__.py

@@ -1,5 +1,5 @@
 """Binary operations tool."""
-__version__ = "0.5.6-dev0"
+__version__ = "0.5.4-dev0"
 
 from . import utils
 from .binops import Operation

transforms/images/image-calculator-tool/.bumpversion.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.2.4-dev0
+current_version = 0.2.3-dev0
 commit = False
 tag = False
 parse = (?P<major>\d+)\.(?P<minor>\d+)\.(?P<patch>\d+)(\-(?P<release>[a-z]+)(?P<dev>\d+))?

transforms/images/image-calculator-tool/README.md

@@ -1,4 +1,4 @@
-# Image Calculator (v0.2.4-dev0)
+# Image Calculator (v0.2.3-dev0)
 
 This plugin performs pixel-wise operations between two image collections.
 For example, images in one image collection can be subtracted from images in another collection.

transforms/images/image-calculator-tool/VERSION

@@ -1 +1 @@
-0.2.4-dev0
+0.2.3-dev0