CHANGES.txt 2024-04-14.2 reports that snp-sites is called from PATH

Author: vinuesa

CHANGES.txt

@@ -1,7 +1,10 @@
 14Apr24  * compiled new static versions of astral and wastral for Linux
          * compiled dynamically linked snp-sites for Linux, which is now called from run_get_phylomarkers_pipeline.sh v2.8.0.1_2024-04-14 using '$bindir/'
-	   - NOTES: snp-sites should be statically compiled; The Docker image and TravisCI install snp-sites via apt install
-         * run_get_phylomarkers_pipeline.sh v2.8.0.1_2024-04-14
+	   - NOTES: snp-sites should be statically compiled or it will fail when called as '$bindir/snp-sites'
+	            The Docker image and TravisCI install snp-sites via apt install
+         * run_get_phylomarkers_pipeline.sh 2.8.0.2_2024-04-14
+	   - removed '$bindir/' from snp-sites call, because it is dynamically linked, and won't run on TravisCI. It is currently called from PATH
+	 * run_get_phylomarkers_pipeline.sh v2.8.0.1_2024-04-14
            - changed default IQT_threads=AUTO to IQT_threads=2 # used only with concatenated supermatrix 2|INTEGER; AUTO is too slow
            - prepended '$bindir/' to iqtree and snp-sites calls that still missed it. NOTE: snp-sites needs to be statically compiled
            - SC2044: replaced two for loops over find output for a more robust while read loop reading from <(cmd)