ivar to development version

Author: pratas

input_data/index.txt

@@ -1 +1 @@
-#place your input fastq files in this folder in gzip format
+#place your input fastq files in this folder in gzip format [symlinks can be used, for example: ls ../../*.fastq.gz | xargs ln -s -t . ]

src/TRACES_install.sh

@@ -60,7 +60,7 @@ if [[ "$INSTALL_PIPELINE" -eq "1" ]];
   conda install -c bioconda art --yes
   conda install -c bioconda blast --yes
   conda install -c bioconda mummer4 --yes
-  conda install -c bioconda ivar --yes
+#  conda install -c bioconda ivar --yes
   #
   Program_installed "trimmomatic";
   Program_installed "cryfa";
@@ -83,7 +83,7 @@ if [[ "$INSTALL_PIPELINE" -eq "1" ]];
   Program_installed "art_illumina";
   Program_installed "blastn";
   Program_installed "dnadiff";
-  Program_installed "ivar";
+#  Program_installed "ivar";
   fi
 #
 # ==============================================================================