vEcoli/.dockerignore at master · vivarium-collective/vEcoli · GitHub

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# Large files #
###############
notebooks
data
reconstruction/sim_data
reconstruction/ecoli/scripts
doc

# Git #
#######
.git
.github

# Dist files #
##############
/build
/dist
/vEcoli.egg-info
/Build_sequences.egg-info
/Fast_polymerize_sums.egg-info
/Monte_carlo_complexation.egg-info

*.out
out/
/out
.idea/
*.iml

# User files #
##############
user/*
!user/user.txt
*.cprof
.ipynb_checkpoints
cache/

# Compiled source #
###################
*.pyc
__pycache__
*.so
/wholecell/utils/*.c

# OS generated files #
######################
.DS_Store
.DS_Store?
._*
.python-version
.pytest_cache
.mypy_cache/
.ruff_cache/

# VS Code files #
#################
/.vscode

# Nextflow files #
##################
.nextflow*
nextflow_temp
trace-*

# uv venv #
###########
.venv/

# Sherlock test #
#################
test_sherlock/