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Description
Hi
I am trying to run megahit on a linux sever, I had to install megahit via miniconda3 (conda install megahit etc)
The program runs well at first but then is exits with an error (-9) -- see part of the output below.
I am trying to figure out -- if this a memory problem, or installation problem or a bad fastq file problem
2025-03-31 16:57:13 - b'INFO utils/utils.h : 152 - Real: 10034.3641\tuser: 7648.4017\tsys: 802.8217\tmaxrss: 250532'
2025-03-31 16:57:14 - k-max reset to: 141
2025-03-31 16:57:14 - Start assembly. Number of CPU threads 40
2025-03-31 16:57:14 - k list: 21,29,39,59,79,99,119,141
2025-03-31 16:57:14 - Memory used: 121545909043
2025-03-31 16:57:14 - Extract solid (k+1)-mers for k = 21
2025-03-31 17:26:19 - Error occurs, please refer to /media/RAID/rubine/miniconda3/er-data/megahit_result/log for detail
2025-03-31 17:26:19 - Command: /media/RAID/rubine/miniconda3/bin/megahit_core count -k 21 -m 2 --host_mem 121545909043 --mem_flag 1 --output_prefix /media/RAID/rubine/miniconda3/er-data/megahit_result/tmp/k21/21 --num_cpu_threads 40 --read_lib_file /media/RAID/rubine/miniconda3/er-data/megahit_result/tmp/reads.lib; Exit code -9