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Merge branch 'master' of github.com:vpc-ccg/genion
2 parents d288ec7 + a4f49b1 commit 5c27419

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README.md

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@@ -81,7 +81,7 @@ cat [cdna.selfalign.paf] | cut -f1,6 | sed 's/_/\t/g' | awk 'BEGIN{OFS=\"\\t\";}
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### Output
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* [output]: Contains called gene fusions and readthrough. It is a tab separated sheet with the following columns.
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* `gene1.id::gene2.id gene1.name::gene2.name ffigf-score FiN-score supporting-reads normal-counts pass-fail-code`
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* `gene1.id::gene2.id gene1.name::gene2.name ffigf-score FiN-score supporting-reads normal-counts pass-fail-code ranges`
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* ffigf-score of fusion A::B : Number of supporting A::B fusion reads divided by number of fusion reads mapping to gene A or gene B but not both.
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* FiN-score: Number of supporting A::B fusion reads divided by sum of number of normal A reads and B normal reads (normal being reads not supporting any gene fusions)
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* normal-counts: ';' separated list of non-chimeric read counts of the member genes.

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