Skip to content

Commit 15117fc

Browse files
committed
update readme
1 parent 5f8ab42 commit 15117fc

1 file changed

Lines changed: 6 additions & 0 deletions

File tree

README.md

Lines changed: 6 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -324,6 +324,7 @@ If the context is not specified in square brackets along with modification code,
324324
Minimod is expected to support standard modifications given in the table above and any other either given as modification code or ChEBI code in MM tag of the BAM record.
325325
Note that we have done a lot of testing on 5mC and some limited testing on 6mA and 5hmC. The others are not thoroughly tested. Following is a summary of tests we have performed.
326326
327+
### ONT
327328
| DNA/RNA | mod+base called model | aligned to | tested modification[context] combinations |
328329
| - | - | - | - |
329330
| DNA | 5mCG_5hmCG | hg38 genome | m[CG], h[CG], m[C], h[C], m[any], any[any] |
@@ -343,6 +344,11 @@ Note that we have done a lot of testing on 5mC and some limited testing on 6mA a
343344
| RNA | pseU_2OmeU | gencode.v40 transcriptome | 19227[T], 17802[T], any[any] |
344345
| RNA | m5C_2OmeC_inosine_m6A_2OmeA_pseU_2OmeU_2OmeG | gencode.v40 transcriptome | 69426[A], any[any] |
345346
347+
### Pacbio
348+
| DNA/RNA | aligned to | tested modification[context] combinations |
349+
| - | - | - |
350+
| DNA | hg38 genome | m[CG] |
351+
346352
# Modification threshold
347353
Base modification threshold can be set for freq tool using -m option.
348354

0 commit comments

Comments
 (0)