forked from Stanford-STAGES/sleep-staging
-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathsc_validate.py
More file actions
88 lines (67 loc) · 2.96 KB
/
Copy pathsc_validate.py
File metadata and controls
88 lines (67 loc) · 2.96 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
import numpy as np
import sc_network
import sc_config
import sc_reader_validate
import tensorflow as tf
flags = tf.app.flags
FLAGS = flags.FLAGS
flags.DEFINE_string('scope', 'oct', 'Which scope to test')
flags.DEFINE_string('model', 'oct_sh_ls_lstm', 'Which model to test')
flags.DEFINE_integer('checknr', 0, 'Whether or not to continue previous')
def main(argv=None):
if FLAGS.model[0:3] == 'oct':
config = sc_config.OCConfig(model_name=FLAGS.model, is_training=False)
else:
config = sc_config.ACConfig(model_name=FLAGS.model, is_training=True)
test(config)
def test(config):
validation_data = sc_reader_validate.ScoreData(config.train_data, config)
while validation_data.anyleft:
with tf.Graph().as_default(), tf.Session(config=tf.ConfigProto(log_device_placement=False)) as session:
m = sc_network.SCModel(config)
s = tf.train.Saver(tf.all_variables())
summary_op = tf.merge_all_summaries()
ckpt = tf.train.get_checkpoint_state(config.model_dir)
s.restore(session, ckpt.model_checkpoint_path)
print(ckpt.model_checkpoint_path)
check_string = ckpt.model_checkpoint_path
string_ind = check_string.find('ckpt') + 5
validation_data.iter_rewind = int(ckpt.model_checkpoint_path[string_ind:])
for batch_input, batch_target in validation_data:
print(str(validation_data.iter_batch)+' of '+str(validation_data.num_batches))
batch_target = np.squeeze(batch_target)
if (validation_data.iter_batch==0 or not(validation_data)) and config.lstm:
state = np.zeros([np.ones([1]),config.num_hidden*2])
if np.rank(batch_input)==2:
batch_input = np.expand_dims(batch_input,0)
if config.lstm:
"""
loss, cross_ent, accuracy, baseline, state = session.run([m.loss, m.cross_ent, m.accuracy, m.baseline, m.final_state], feed_dict={
m.features: batch_input,
m.targets: batch_target,
m.mask: np.ones(len(batch_target)),
m.batch_size: 10
})
"""
loss, cross_ent, accuracy, baseline, confidence, summary_str, softmax = session.run([m.loss, m.cross_ent, m.accuracy, m.baseline, m.confidence, summary_op, m.softmax ], feed_dict={
m.features: batch_input,
m.targets: batch_target,
m.mask: np.ones(len(batch_target)),
m.batch_size: 1,
m.learning_rate: 0
})
else:
loss, cross_ent, accuracy, baseline = session.run([m.loss, m.cross_ent, m.accuracy, m.baseline], feed_dict={
m.features: batch_input,
m.targets: batch_target,
m.mask: np.ones(len(batch_target)),
m.batch_size: np.ones([1])
})
print('Acc')
print(accuracy)
print(baseline)
print('Loss')
print(loss)
validation_data.record_results(loss,cross_ent,accuracy,baseline)
if __name__ == '__main__':
#tf.app.run()