It has been found that some Boltz-1 generated PDB files are not correctly formatted (e.g. 6v3h_A_1421_7173_protein.pdb). biopandas functionalities, biopython functionalities, MDAnalysis functionalities and LoadPDBasDF all were not able to correctly parse the files. We will need to either write a customized function to handle such cases and report this to Boltz-1 team after we collect more information about the error pattern.
It has been found that some Boltz-1 generated PDB files are not correctly formatted (e.g.
6v3h_A_1421_7173_protein.pdb).biopandasfunctionalities,biopythonfunctionalities,MDAnalysisfunctionalities andLoadPDBasDFall were not able to correctly parse the files. We will need to either write a customized function to handle such cases and report this to Boltz-1 team after we collect more information about the error pattern.