How to use GO dataset?

[tuvefou]

Hello, I’d like to run the GO dataset and obtain the Fmax metric, but I’m not sure how to go about it. Could you please provide a tutorial?

[LTEnjoy]

Hi,

You could follow this tutorial https://github.com/westlake-repl/SaProt?tab=readme-ov-file#fine-tune-saprot to finetune SaProt. You could run the GO dataset by replacing the .yaml file with the GO task :)

[Whispering-code]

hello, I also want to use the go and ec dataset, but I don't know how to revert the label id to the original name of go/ec, e.g. GO:0004364. Could you provide this label mapping table?

[LTEnjoy]

Hi!

Sorry we also don't know how to convert the label ids to original text annotations. The GO and EC datasets we downloaded had already been processed into digital labels.