Summary:

Add Newick tree output to pyani.

Description:

In #186 a question was raised about generating trees from pyani directly. At the moment this isn't implemented, but could be done fairly readily. One API implementation for writing might be:

pyani tree --formats [newick,nexus] <output_dir> <run ID>

or for graphical output:

pyani plot --formats [png,pdf] --method ete3 <output_dir> <run ID>

Current Output:

Not implemented

pyani Version:

v0.3+