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Issues list

test_cli_parsing() tests fail when pytest is run with no flags bug something isn't working how it should interface issues related to how the user tells pyani to do something tests issues relating to tests
#402 opened Jun 9, 2022 by baileythegreen 0.3.0
1
1
Add a --dry-run flag, generally enhancement something we'd like pyani to do that it doesn't already interface issues related to how the user tells pyani to do something
#343 opened Oct 1, 2021 by baileythegreen 0.3.1
8
Add SLURM support enhancement something we'd like pyani to do that it doesn't already HIGH PRIORITY high priority issue interface issues related to how the user tells pyani to do something
#215 opened Aug 3, 2020 by widdowquinn 0.3.0
1
@widdowquinn
10
Add pyani tree subcommand enhancement something we'd like pyani to do that it doesn't already interface issues related to how the user tells pyani to do something
#187 opened May 25, 2020 by widdowquinn 0.3.1
1
@widdowquinn
12
Add pyani evolve command. enhancement something we'd like pyani to do that it doesn't already interface issues related to how the user tells pyani to do something method the issue relates to how results are calculated
#180 opened Feb 27, 2020 by widdowquinn 0.3.1
@widdowquinn
2
Update logging exceptions enhancement something we'd like pyani to do that it doesn't already interface issues related to how the user tells pyani to do something style clean conformance to style guides and preferences
#152 opened Oct 2, 2019 by widdowquinn 0.3.0
@widdowquinn
Flask interface onto SQLite3 backend enhancement something we'd like pyani to do that it doesn't already interface issues related to how the user tells pyani to do something
#148 opened Oct 2, 2019 by widdowquinn 0.3.3
@widdowquinn
Have pyani use a user-controlled config file enhancement something we'd like pyani to do that it doesn't already interface issues related to how the user tells pyani to do something
#146 opened Oct 2, 2019 by widdowquinn 0.3.0
@widdowquinn
4
Add explicit warnings for zero-identity comparison runs enhancement something we'd like pyani to do that it doesn't already interface issues related to how the user tells pyani to do something
#145 opened Oct 1, 2019 by widdowquinn 0.3.0
@widdowquinn
4
Use JSON for labels/classes files enhancement something we'd like pyani to do that it doesn't already interface issues related to how the user tells pyani to do something
#136 opened Jun 21, 2019 by widdowquinn 0.3.1
@widdowquinn
2
Add pyani subsample command enhancement something we'd like pyani to do that it doesn't already interface issues related to how the user tells pyani to do something method the issue relates to how results are calculated
#135 opened Jun 21, 2019 by widdowquinn 0.3.1
@widdowquinn
Although I specify --workers, mummer/nucmer is still running on the maximum number of cores. How can I limit the number of cores for nucmer? bug something isn't working how it should enhancement something we'd like pyani to do that it doesn't already interface issues related to how the user tells pyani to do something unable to reproduce we tried to make your issue happen for us but could not
#122 opened Nov 22, 2018 by widdowquinn
@widdowquinn
7
Order rows and columns in ANIm_percentage_identity.tab in clustering order like images enhancement something we'd like pyani to do that it doesn't already interface issues related to how the user tells pyani to do something question how can I do this? why does it do that? where can I get this? etc.
#116 opened Aug 16, 2018 by louellette 0.3.1
@widdowquinn
3
Fetching only n genomes with genbank_get_genomes_by_taxon.py enhancement something we'd like pyani to do that it doesn't already interface issues related to how the user tells pyani to do something
#94 opened Sep 11, 2017 by sbridel 0.3.1
@widdowquinn
5
ProTip! Adding no:label will show everything without a label.