NEWS.md

clusterProfiler 3.18.0

• Bioconductor 3.12 release (2020-10-28, Wed)

clusterProfiler 3.17.5

• update [[.compareClusterResult (2020-10-14, Wed)

clusterProfiler 3.17.3

• internal suports of enrichment analyses using WikiPathways (2020-09-09, Wed)
  • enrichWP for ORA analysis
  • gseWP for GSEA analysis
  • get_wp_organisms for listing supported organisms
  • read.gmt.wp for parsing gmt file downloaded from wikiPathways

clusterProfiler 3.17.2

• use libcurl if capable (2020-09-08, Tue)
  • YuLab-SMU#290

clusterProfiler 3.17.1

• bug fixed of extract_params (2020-08-18, Tue)
  • YuLab-SMU#282

clusterProfiler 3.16.0

• Bioconductor 3.11 release

clusterProfiler 3.15.3

• incorporate clusterProfiler.dplyr (2020-03-12, Thu)
  • arrange, filter, group_by, mutate, rename, select, slice and summarize

clusterProfiler 3.15.2

• remove Suggests of KEGG.db as it will be deprecated in Bioconductor 3.11 (2020-01-14, Tue)
• optimize enrichGO to use less memory (2019-12-13, Fri)
• re-implement read.gmt without using GSEABase, and my own version is much more fasta :)

clusterProfiler 3.15.1

• e.g. user can pass fun=enrichGO to compareCluster without quoting enrichGO (2019-12-02, Mon)
• add keytype and readable info in compareCluster output
• mv compareClusterResult class defintion to DOSE (2019-11-02, Sat)
• mv fortify, barplot and dotplot for compareClusterResult to enrichplot.

clusterProfiler 3.14.0

• Bioconductor 3.10 release

clusterProfiler 3.12.0

• Bioconductor 3.9 release

clusterProfiler 3.11.1

• asis parameter in [.compareClusterResult (2018-12-24, Mon)
  • YuLab-SMU/enrichplot#17

clusterProfiler 3.10.0

• Bioconductor 3.8 release

clusterProfiler 3.9.2

• re-export DOSE::gsfilter and DOSE::setReadable (2018-05-25, Fri)

clusterProfiler 3.9.1

• change color scheme of dotplot of compareClusterResult back to red->purple (2018-05-17, Thu)
  • https://support.bioconductor.org/p/108996/

clusterProfiler 3.8.0

• Bioconductor 3.7 release

clusterProfiler 3.7.1

• uniprot_get function (2018-01-30, Tue)
• import enrichplot (2018-01-29, Mon)