Reimplementation of "Finding gene network topologies for given biological function with recurrent neural network" (Shen et al. 2020) for educational purposes1.
Main changes are in modularity, using torch instead of tensorflow, adding default plotting functionality, and building a pypi package for easy distribution.
Installation:
pip install regulatory_rnn
Usage examples can be found in the notebooks folder.
Footnotes
-
Original repository: https://github.com/sjx93/rnn_for_gene_network_2020 ↩