README.qmd

---
title: OpenPipeline
format: gfm
---

<!-- README.md is generated by running 'quarto render README.qmd' -->

```{r, echo = FALSE, message = FALSE, error = FALSE, warning = FALSE}
library(tidyverse)
```

Extensible single cell analysis pipelines for reproducible and large-scale single cell processing using Viash and Nextflow. 

The provided pipelines are built using the [Viash framework](http://www.viash.io) on top of the 
nextflow workflow system. For more information on Nextflow please visit the [Nextflow github page](https://github.com/nextflow-io/nextflow) 
and the [Nextflow read the docs page](https://www.nextflow.io/docs/latest/index.html).