Bump conda env dependencies (#408)

Author: tomvothecoder

.github/ISSUE_TEMPLATE/config.yml

@@ -4,14 +4,13 @@ contact_links:
       url: https://github.com/xCDAT/xcdat/discussions
       about: |
           Ask questions and discuss with other xCDAT community members here. Please
-          refer to the documentation xCDAT documentation first before asking a
+          browse the xCDAT Discussions Forum or xCDAT documentation first before asking a
           question to make sure it is not already answered. If you can't find an
           answer, please include a self-contained reproducible example with your
-          question if possible.
+          question if possible. Thanks!
 
     - name: Usage question (xarray)
       url: https://github.com/pydata/xarray/discussions
       about: |
           If your questions or discussions are related to xarray, please visit this page
           to reach out to xarray community members.
-

.pre-commit-config.yaml

@@ -4,26 +4,26 @@ fail_fast: true
 
 repos:
     - repo: https://github.com/pre-commit/pre-commit-hooks
-      rev: v4.3.0
+      rev: v4.4.0
       hooks:
           - id: trailing-whitespace
           - id: end-of-file-fixer
           - id: check-yaml
 
     - repo: https://github.com/psf/black
-      rev: 22.10.0
+      rev: 22.12.0
       hooks:
           - id: black
 
     - repo: https://github.com/timothycrosley/isort
-      rev: 5.10.1
+      rev: 5.11.4
       hooks:
           - id: isort
 
     # Need to use flake8 GitHub mirror due to CentOS git issue with GitLab
     # https://github.com/pre-commit/pre-commit/issues/1206
     - repo: https://github.com/pycqa/flake8
-      rev: 5.0.4
+      rev: 6.0.0
       hooks:
           - id: flake8
             args: ["--config=setup.cfg"]
@@ -37,8 +37,8 @@ repos:
             additional_dependencies:
                 [
                     dask==2022.10.2,
-                    numpy==1.23.4,
-                    pandas==1.5.1,
-                    xarray==2022.11.0,
+                    numpy==1.23.5,
+                    pandas==1.5.3,
+                    xarray==2023.1.0,
                     types-python-dateutil==2.8.19,
                 ]

conda-env/dev.yml

@@ -8,50 +8,51 @@ dependencies:
     # Base
     # ==================
     # NOTE: If versions are updated, also `additional_dependencies` list for mypy in `.pre-commit-config.yaml`
-    - python=3.10.6
+    - python=3.10.8
     - pip=22.3.1
-    - cf_xarray=0.7.4
+    - cf_xarray=0.7.7
     - cftime=1.6.2
-    - dask=2022.10.2
-    - netcdf4=1.6.1
-    - numpy=1.23.4
-    - pandas=1.5.1
+    - dask=2023.1.0
+    - netcdf4=1.6.2
+    - numpy=1.23.5
+    - pandas=1.5.3
     - python-dateutil=2.8.2
-    - xarray=2022.11.0
+    - xarray=2023.1.0
     # ==================
     # Optional
     # ==================
-    - xesmf=0.6.3
+    - xesmf=0.7.0
+    - matplotlib=3.6.3
+    - nc-time-axis=1.4.1
     # ==================
     # Documentation
     # ==================
     - sphinx=4.5.0
     - sphinx-autosummary-accessors=2022.4.0
     - sphinx-book-theme=0.3.3
     - sphinx-copybutton=0.5.0
-    - nbsphinx=0.8.9
+    - nbsphinx=0.8.12
     - pandoc=2.19.2
-    - ipython=8.5.0 # Required for nbsphinx syntax highlighting
+    - ipython=8.8.0 # Required for nbsphinx syntax highlighting
     # ==================
     # Quality Assurance
     # ==================
     # NOTE: If versions are updated, also update 'rev' in `.pre-commit.config.yaml`
-    - black=22.10.0
-    - flake8=5.0.4
-    - flake8-isort=5.0.0
-    - isort=5.10.1
-    - mypy=0.990
-    - pre-commit=2.20.0
+    - black=22.12.0
+    - flake8=6.0.0
+    - flake8-isort=6.0.0
+    - isort=5.11.4
+    - mypy=0.991
+    - pre-commit=2.21.0
     - types-python-dateutil=2.8.19
     # ==================
     # Testing
     # ==================
-    - pytest=7.2.0
+    - pytest=7.2.1
     - pytest-cov=4.0.0
     # ==================
     # Developer Tools
     # ==================
-    - matplotlib=3.6.2
-    - jupyterlab=3.5.0
+    - jupyterlab=3.5.3
     - tbump=6.9.0
 prefix: /opt/miniconda3/envs/xcdat_dev

conda-env/readthedocs.yml

@@ -7,21 +7,20 @@ dependencies:
     # Base
     # ==================
     # NOTE: If versions are updated, also `additional_dependencies` list for mypy in `.pre-commit-config.yaml`
-    - python=3.10.6
+    - python=3.10.8
     - pip=22.3.1
-    - cf_xarray=0.7.4
+    - cf_xarray=0.7.7
     - cftime=1.6.2
-    - dask=2022.10.2
-    - netcdf4=1.6.1
-    - numpy=1.23.4
-    - pandas=1.5.1
+    - dask=2023.1.0
+    - netcdf4=1.6.2
+    - numpy=1.23.5
+    - pandas=1.5.3
     - python-dateutil=2.8.2
-    - xarray=2022.11.0
+    - xarray=2023.1.0
     # ==================
     # Optional
     # ==================
-    - xesmf=0.6.3
-    # ==================
+    - xesmf=0.7.0
     # ==================
     # Quality Assurance
     # ==================
@@ -32,7 +31,7 @@ dependencies:
     - sphinx-autosummary-accessors=2022.4.0
     - sphinx-book-theme=0.3.3
     - sphinx-copybutton=0.5.0
-    - nbsphinx=0.8.9
-    - pandoc=2.19
-    - ipython=8.5.0 # Required for nbsphinx syntax highlighting.
+    - nbsphinx=0.8.12
+    - pandoc=2.19.2
+    - ipython=8.8.0 # Required for nbsphinx syntax highlighting.
 prefix: /opt/miniconda3/envs/xcdat_rtd