Merge pull request #686 from xgi-org/fix-test-collection

Fix slow test collection and matplotlib GUI popups

Author: kaiser-dan

.github/workflows/test-code.yml

@@ -36,4 +36,4 @@ jobs:
         pytest --color=yes
         # run doctests
         cd ../xgi/
-        pytest --color=yes
+        pytest --doctest-modules --color=yes

conftest.py

@@ -0,0 +1,3 @@
+import matplotlib
+
+matplotlib.use("Agg")

pyproject.toml

@@ -106,8 +106,7 @@ where = ["."]
 attr = "xgi.__version__"
 
 [tool.pytest.ini_options]
-# always run doctests
-addopts = "--doctest-modules --ignore=docs"
+addopts = "--ignore=docs"
 
 # custom markers
 markers = [

xgi/stats/__init__.py

@@ -113,8 +113,9 @@ def name(self):
         ('degree', 'degree(order=3)')
         >>> H.nodes.multi([da, d3]).asdict(transpose=True).keys()
         dict_keys(['degree', 'degree(order=3)'])
-        >>> H.nodes.multi([da, d3]).aspandas().columns
-        Index(['degree', 'degree(order=3)'], dtype='object')
+        >>> cols = H.nodes.multi([da, d3]).aspandas().columns
+        >>> list(cols)
+        ['degree', 'degree(order=3)']
 
         """
         name = f"{self.func.__name__}"