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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(compMatrix)
export(diffHet)
export(epiBox)
export(epiMA)
export(epiMap)
export(epiPCA)
export(epiTSNE)
export(epinetwork)
export(epipathway)
export(jaccard)
export(makeGR)
export(methClone)
export(moduleanno)
export(modulesim)
export(modulevisual)
export(readGR)
export(splitn)
export(summarize)
export(userobj)
export(shannon)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,seqnames)
importFrom(GenomicRanges,values)
importFrom(IRanges,IRanges)
importFrom(Rcpp,sourceCpp)
importFrom(ReactomePA,enrichPathway)
importFrom(Rtsne,Rtsne)
importFrom(S4Vectors,Rle)
importFrom(S4Vectors,queryHits)
importFrom(WGCNA,blockwiseModules)
importFrom(WGCNA,exportNetworkToCytoscape)
importFrom(WGCNA,labeledHeatmap)
importFrom(WGCNA,moduleEigengenes)
importFrom(WGCNA,pickSoftThreshold)
importFrom(data.table,":=")
importFrom(doMC,registerDoMC)
importFrom(foreach,"%dopar%")
importFrom(foreach,"%do%")
importFrom(foreach,foreach)
importFrom(ggplot2,aes)
importFrom(ggplot2,autoplot)
importFrom(ggplot2,element_text)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggplot2,position_dodge)
importFrom(S4Vectors,subjectHits)
importFrom(GenomicRanges,mcols)
importFrom(ggplot2,theme_linedraw)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,guides)
importFrom(utils,tail)
importFrom(qvalue,qvalue)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grDevices,rgb)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,par)
importFrom(graphics,barplot)
importFrom(igraph,layout_on_sphere)
importFrom(pheatmap,pheatmap)
importFrom(EntropyExplorer,EntropyExplorer)
importFrom(stats,complete.cases)
importFrom(stats,cor)
importFrom(stats,p.adjust)
importFrom(stats,prcomp)
importFrom(stats,quantile)
importFrom(stats,sd)
importFrom(stats,t.test)
importFrom(stats,phyper)
useDynLib(epihet)