003.Figure 2B (igv plot).md

1 Get capsule-, stem-, and root-specific pTHSs except leaf and petal tissue

Because BIA related genes are co-expressed in stem, capsule and root, not in leaf or petal!

## manually get stem, capsule and root related peaks from intervene results

cd /mnt/d/ATAC_peak/Intervene_results/sets
cat * > /mnt/d/ATAC_peak/BIA/four_tissue.bed
cd /mnt/d/ATAC_peak/BIA/
sortBed -i four_tissue.bed > four_tissue_sort.bed

2 visualization by IGV

3 Figure 2B was constructed in AI