requirements.txt

adjusttext>=1.3.0
asciitree>=0.3.3
blinker>=1.9.0
blosc2>=3.4.0
cairocffi>=1.7.1
certifi>=2025.6.15
cffi>=1.17.1
charset-normalizer>=3.4.2
click>=8.2.1
click-option-group>=0.5.7
contourpy>=1.3.2
cooler>=0.10.3
cycler>=0.12.1
cytoolz>=1.0.1
dill>=0.4.0
filetype>=1.2.0
flask>=3.1.1
fonttools>=4.58.4
h5py>=3.14.0
hicmatrix>=17.2
idna>=3.10
intervaltree>=3.1.0
itsdangerous>=2.2.0
jinja2>=3.1.6
kiwisolver>=1.4.8
loguru>=0.7.3
markupsafe>=3.0.2
matplotlib>=3.10.3
msgpack>=1.1.1
multiprocess>=0.70.18
ndindex>=1.10.0
numexpr>=2.11.0
numpy>=2.3.0
packaging>=25.0
pandas>=2.3.0
pillow>=11.2.1
platformdirs>=4.3.8
py-cpuinfo>=9.0.0
pybigwig>=0.3.24
pycparser>=2.22
pyfaidx>=0.8.1.4
pyparsing>=3.2.3
pysam>=0.23.3
python-dateutil>=2.9.0.post0
pytz>=2025.2
pyyaml>=6.0.2
requests>=2.32.4
scipy>=1.15.3
seaborn>=0.13.2
simplejson>=3.20.1
six>=1.17.0
sortedcontainers>=2.4.0
tables>=3.10.2
toolz>=1.0.0
typing-extensions>=4.14.0
tzdata>=2025.2
urllib3>=2.5.0
werkzeug>=3.1.3
xmltodict>=1.0.2