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ygidtuygidtu
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update requirements and fix bugs in web annotation
1 parent 9ca0126 commit 21b8582

16 files changed

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‎.gitignore‎

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*.zip
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example/
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recipes/
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AppDir/
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appimage-build/

‎AppImageBuilder.yml‎

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# Remove any previous build
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- rm -rf AppDir | true
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# Copy the python application code into the AppDir
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- mamba create -y -p AppDir python=3.11
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- micromamba create -y -p ./AppDir python=3.11
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- mkdir AppDir/opt && cp -r main.py trackplot pyproject.toml poetry.lock README.md ui AppDir/opt
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- AppDir/bin/pip install -e AppDir/opt
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AppDir:
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app_info:
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id: org.appimage-crafters.trackplot
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name: trackplot
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version: 0.3.6
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version: 0.3.7
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# Set the python executable as entry point
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exec: "bin/python3"
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# Set the application main script path as argument. Use '$@' to forward CLI parameters

‎Pipfile‎

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@@ -42,7 +42,7 @@ numexpr = "==2.8.6"
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numpy = "==1.24.4"
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packaging = "==23.2"
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pandas = "==1.5.3"
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pillow = "==10.1.0"
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pillow = "*"
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py-cpuinfo = "==9.0.0"
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pybigwig = "==0.3.22"
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pycparser = "==2.21"

‎poetry.lock‎

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‎pyproject.toml‎

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[tool.poetry]
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name = "trackplot"
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version = "0.3.6"
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version = "0.3.7"
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description = "The trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and full-length sequencing datasets. https://sashimi.readthedocs.io/"
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authors = ["ygidtu <ygidtu@gmail.com>"]
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license = "BSD-3"

‎requirements.txt‎

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@@ -12,35 +12,35 @@ colorama==0.4.6 ; python_version >= "3.8" and python_version < "3.12" and (platf
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contourpy==1.1.1 ; python_version >= "3.8" and python_version < "3.12"
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cooler==0.9.3 ; python_version >= "3.8" and python_version < "3.12"
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cycler==0.12.1 ; python_version >= "3.8" and python_version < "3.12"
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cython==3.0.5 ; python_version >= "3.8" and python_version < "3.12"
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cython==3.0.8 ; python_version >= "3.8" and python_version < "3.12"
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cytoolz==0.12.2 ; python_version >= "3.8" and python_version < "3.12"
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dill==0.3.7 ; python_version >= "3.8" and python_version < "3.12"
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filetype==1.2.0 ; python_version >= "3.8" and python_version < "3.12"
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flask==2.3.3 ; python_version >= "3.8" and python_version < "3.12"
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fonttools==4.45.1 ; python_version >= "3.8" and python_version < "3.12"
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fonttools==4.47.2 ; python_version >= "3.8" and python_version < "3.12"
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h5py==3.10.0 ; python_version >= "3.8" and python_version < "3.12"
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hicmatrix==15 ; python_version >= "3.8" and python_version < "3.12"
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idna==3.4 ; python_version >= "3.8" and python_version < "3.12"
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importlib-metadata==6.8.0 ; python_version >= "3.8" and python_version < "3.12"
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idna==3.6 ; python_version >= "3.8" and python_version < "3.12"
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importlib-metadata==7.0.1 ; python_version >= "3.8" and python_version < "3.12"
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importlib-resources==6.1.1 ; python_version >= "3.8" and python_version < "3.10"
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intervaltree==3.1.0 ; python_version >= "3.8" and python_version < "3.12"
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itsdangerous==2.1.2 ; python_version >= "3.8" and python_version < "3.12"
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jinja2==3.1.2 ; python_version >= "3.8" and python_version < "3.12"
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jinja2==3.1.3 ; python_version >= "3.8" and python_version < "3.12"
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kiwisolver==1.4.5 ; python_version >= "3.8" and python_version < "3.12"
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loguru==0.6.0 ; python_version >= "3.8" and python_version < "3.12"
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markupsafe==2.1.3 ; python_version >= "3.8" and python_version < "3.12"
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markupsafe==2.1.4 ; python_version >= "3.8" and python_version < "3.12"
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matplotlib==3.7.4 ; python_version >= "3.8" and python_version < "3.12"
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msgpack==1.0.7 ; python_version >= "3.8" and python_version < "3.12"
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multiprocess==0.70.15 ; python_version >= "3.8" and python_version < "3.12"
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numexpr==2.8.6 ; python_version >= "3.8" and python_version < "3.12"
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numpy==1.24.4 ; python_version >= "3.8" and python_version < "3.12"
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packaging==23.2 ; python_version >= "3.8" and python_version < "3.12"
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pandas==1.5.3 ; python_version >= "3.8" and python_version < "3.12"
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pillow==10.1.0 ; python_version >= "3.8" and python_version < "3.12"
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pillow==10.2.0 ; python_version >= "3.8" and python_version < "3.12"
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py-cpuinfo==9.0.0 ; python_version >= "3.8" and python_version < "3.12"
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pybigwig==0.3.22 ; python_version >= "3.8" and python_version < "3.12"
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pycparser==2.21 ; python_version >= "3.8" and python_version < "3.12"
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pyfaidx==0.7.2.2 ; python_version >= "3.8" and python_version < "3.12"
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pyfaidx==0.8.1.1 ; python_version >= "3.8" and python_version < "3.12"
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pyparsing==3.1.1 ; python_version >= "3.8" and python_version < "3.12"
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pysam==0.21.0 ; python_version >= "3.8" and python_version < "3.12"
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python-dateutil==2.8.2 ; python_version >= "3.8" and python_version < "3.12"
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requests==2.31.0 ; python_version >= "3.8" and python_version < "3.12"
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scipy==1.10.1 ; python_version >= "3.8" and python_version < "3.12"
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seaborn==0.12.2 ; python_version >= "3.8" and python_version < "3.12"
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setuptools==69.0.2 ; python_version >= "3.8" and python_version < "3.12"
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setuptools==69.0.3 ; python_version >= "3.8" and python_version < "3.12"
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simplejson==3.19.2 ; python_version >= "3.8" and python_version < "3.12"
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six==1.16.0 ; python_version >= "3.8" and python_version < "3.12"
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sortedcontainers==2.4.0 ; python_version >= "3.8" and python_version < "3.12"

‎trackplot/plot.py‎

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faulthandler.enable()
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__version__ = "0.3.6"
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__version__ = "0.3.7"
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__author__ = "ygidtu & Ran Zhou"
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__email__ = "ygidtu@gmail.com"
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‎web/package.json‎

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{
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"name": "trackplot",
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"private": true,
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"version": "0.3.6",
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"version": "0.3.7",
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"type": "module",
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"scripts": {
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"dev": "vite",
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"build": "vite build",
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"preview": "vite preview"
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},
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"dependencies": {
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"@element-plus/icons-vue": "^2.1.0",
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"@types/file-saver": "^2.0.5",
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"axios": "^0.27.2",
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"element-plus": "^2.3.14",
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"@element-plus/icons-vue": "^2.3.1",
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"@types/file-saver": "^2.0.7",
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"axios": "^1.6.5",
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"element-plus": "^2.5.3",
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"file-saver": "^2.0.5",
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"typescript": "^5.2.2",
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"vue": "^3.3.4",
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"vue-axios": "^3.5.2",
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"typescript": "^5.3.3",
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"vue": "^3.4.15",
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"vue-cookie-next": "^1.3.0",
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"vue-cookies": "^1.8.3",
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"vue-cookies-ts": "^1.5.19",
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"@vitejs/plugin-vue": "^3.2.0",
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"unplugin-auto-import": "^0.11.5",
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"unplugin-vue-components": "^0.22.12",
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"vite": "^3.2.7"
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"vite": "^3.2.8"
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}
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}

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