fix bugs with numpy=1.24.1

Author: ygidtu

Pipfile

@@ -4,22 +4,22 @@ verify_ssl = true
 name = "pypi"
 
 [packages]
-pysam = "*"
-seaborn = "*"
-matplotlib = "*"
-filetype = "*"
+adjusttext = "*"
+cairocffi = "*"
 click = "*"
-numpy = "*"
-requests = "*"
-xmltodict = "*"
-pybigwig = "*"
-pandas = "*"
 click-option-group = "*"
-cairocffi = "*"
+filetype = "*"
 hicmatrix = "*"
 loguru = "*"
+matplotlib = "*"
+numpy = "*"
+pandas = "*"
+pybigwig = "*"
+pysam = "*"
+requests = "*"
 scipy = "*"
-adjusttext = "*"
+seaborn = "*"
+xmltodict = "*"
 
 [dev-packages]
 

Pipfile.lock

@@ -1,48 +1,16 @@
 adjusttext
-asciitree
 cairocffi
-certifi
-cffi
-charset-normalizer
 click
 click-option-group
-contourpy
-cooler
-cycler
-cytoolz
-dill
 filetype
-fonttools
-h5py
 hicmatrix
-idna
-intervaltree
-kiwisolver
 loguru
 matplotlib
-multiprocess
-numexpr
 numpy
-packaging
 pandas
-pillow
 pybigwig
-pycparser
-pyfaidx
-pypairix
-pyparsing
 pysam
-python-dateutil
-pytz
-pyyaml
 requests
 scipy
 seaborn
-setuptools
-simplejson
-six
-sortedcontainers
-tables
-toolz
-urllib3
 xmltodict

requirements.txt

@@ -21,7 +21,7 @@
 from sashimi.file.ATAC import ATAC
 from sashimi.plot import Plot
 
-__version__ = "0.1.4"
+__version__ = "0.1.5"
 __author__ = "ygidtu & Ran Zhou"
 __email__ = "ygidtu@gmail.com"
 

sashimi/cli.py

@@ -17,7 +17,11 @@
 from sashimi.base.Readder import Reader
 from sashimi.file.File import File
 
-np.warnings.filterwarnings('ignore', category=np.VisibleDeprecationWarning)
+
+try:
+    np.warnings.filterwarnings('ignore', category=np.VisibleDeprecationWarning)
+except AttributeError as err:
+    pass
 
 
 class Reads(GenomicLoci):

sashimi/file/ReadSegments.py

@@ -1,7 +1,7 @@
 import os
 from setuptools import setup, find_packages
 
-__version__ = "0.1.4"
+__version__ = "0.1.5"
 __author__ = "ygidtu & Ran Zhou"
 __email__ = "ygidtu@gmail.com"
 

setup.py

@@ -1,7 +1,7 @@
 {
   "name": "sashimi.py",
   "private": true,
-  "version": "0.1.4",
+  "version": "0.1.5",
   "type": "module",
   "scripts": {
     "dev": "vite",